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[183477_at]

Description Y39B6B.E /REP_DB=WormBase Gene ID /WP=CE21677 /TR=Q9NEV4 /GB=CAB60910.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 02      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 1.5
(-0.6)
A 		1.6
(0.6)
A 		1.3
(-3)
A 		1.8
(3)
A 		1
B 1.7
(-3)
A 		2.2
(-2.9)
A 		1.9
(-3)
A 		31
(3)
A 		29
C 2.6
(-1.9)
A 		1.9
(-2.7)
A 		1.6
(-3)
A 		7.3
(3)
A 		6
avr 1.9
(-2.8) 		1.9
(-2.8) 		1.6
(-3) 		13.4
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2.7
(3)
A 		0.9
(-3)
A 		1
(-2.7)
A 		1.4
(-1.3)
A 		1.6
(-0.7)
A 		1.7
(-0.3)
A 		2
B 1.2
(-2.8)
A 		0.7
(-3)
A 		0.8
(-3)
A 		14.6
(3)
A 		1.2
(-2.8)
A 		2.2
(-2.4)
A 		14
C 0.9
(-3)
A 		0.9
(-3)
A 		1.8
(-2.4)
A 		10.4
(3)
A 		1
(-2.9)
A 		2.5
(-2)
A 		10
avr 1.6
(-2.4) 		0.8
(-3) 		1.2
(-2.7) 		8.8
(3) 		1.3
(-2.6) 		2.1
(-2) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 0.5
(3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0.3
(-3)
A 		0
B 0.5
(-2.9)
A 		0.5
(-2.9)
A 		0.4
(-3)
A 		6.6
(3)
A 		6
C 0.8
(-0.4)
A 		0.5
(-3)
A 		0.5
(-3)
A 		1.2
(3)
A 		1
avr 0.6
(-2.5) 		0.4
(-3) 		0.4
(-3) 		2.7
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.5
(3)
A 		0.3
(-1)
A 		0.2
(-3)
A 		0.4
(1)
A 		0.5
(3)
A 		0.4
(1)
A 		0
B 0.4
(-2.7)
A 		0.2
(-3)
A 		0.2
(-3)
A 		3.9
(3)
A 		0.5
(-2.5)
A 		0.8
(-2)
A 		4
C 0.3
(-3)
A 		0.3
(-3)
A 		0.4
(-2.7)
A 		2.1
(3)
A 		0.3
(-3)
A 		0.8
(-1.3)
A 		2
avr 0.4
(-2.7) 		0.3
(-3) 		0.3
(-3) 		2.1
(3) 		0.4
(-2.7) 		0.7
(-1.7) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183477_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19432
Sequence Type Exemplar sequence
Representative Public ID Y39B6B.E NCBI
Target Description Y39B6B.E /REP_DB=WormBase Gene ID /WP=CE21677 /TR=Q9NEV4 /GB=CAB60910.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171589(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171589 NCBI Caenorhabditis elegans Y39B6A.18 (Y39B6A.18) mRNA, complete cds. 11/11 None
SNAP00000030545 ENSEMBL cdna:SNAP chromosome:CEL140:V:19071194:19075798:-1 11/11 None
GENEFINDER00000030693 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19071194:19076746:-1 11/11 None
Y39B6A.18 ENSEMBL cdna:known chromosome:CEL140:V:19071194:19076659:-1 gene:Y39B6A.18 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19071193-19076746(-) 91.56 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39B6A.18
Entrez Gene 180253 Entrez gene
SwissProt Q8MYN9 EMBL-EBI
WormBase CE29860 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAD31816 Hypothetical protein Y39B6A.18 [Caenorhabditis elegans] ref|NP_741679.1| Y39B6A.18 [Caenorhabditis elegans] 0.0
blast T45031 hypothetical protein Y39B6B.e [imported] - Caenorhabditis elegans 0.0
blast CAB60442 Hypothetical protein Y80D3A.8 [Caenorhabditis elegans] ref|NP_507691.1| Y80D3A.8 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.2E-25
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.4E-59
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.2E-25
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.4E-59
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.2E-25
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.4E-59
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741679.1 1 833-855
Y39B6A.18 1 833-855
SNAP00000030545 1 815-837
GENEFINDER00000030693 1 846-868
Sequence
Target Sequence 
>C. ELEGANS:183477_AT
gcaagtcggacggttcatgatcaagatgacaaatatggattttattgtgcaaaagaacat
tatgcgaagatccttcaaagttgccgattcaaccggaaaatttgcggcgagaactctgac
gcactatcaatattcgcaatgggctgaacgtggtgttcccaagagtcatgttgaaacata
tgagctgatggaaatggtcaagaaaagcgagaagccaatcgtggtgcattgttcaaatgg
aattggaagatccatggccttcatcggaaccgagtaccttgcccgtcaagttgaagccga
tccgacaatcgaacttactgaagctctgaaacacttgcacgagcatcgttggaatggagt
tcagaccaattctcagctgtactggatgacactgggaaccatgtaccgtcttatcaagga
atatggatttgacatgaagatttacgatcagcaaatggcaatgttcaatgatgtagtcaa
acggttggaggcacttgacagaatcagcaagtattcggatgcattgtgtgatgagaagaa
gtctaacgagaataaggaagaattggccaacgttaacaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAGTCGGACGGTTCATGATCAAG 445 321 3501 Antisense
AGAACATTATGCGAAGATCCTTCAA 558 73 3554 Antisense
GATCCTTCAAAGTTGCCGATTCAAC 107 417 3569 Antisense
GATTCAACCGGAAAATTTGCGGCGA 688 429 3586 Antisense
GCGGCGAGAACTCTGACGCACTATC 529 293 3604 Antisense
GACGCACTATCAATATTCGCAATGG 653 379 3618 Antisense
GCAATGGGCTGAACGTGGTGTTCCC 666 321 3636 Antisense
GTGGTGTTCCCAAGAGTCATGTTGA 567 489 3650 Antisense
GAAACACTTGCACGAGCATCGTTGG 117 357 3828 Antisense
AACGGTTGGAGGCACTTGACAGAAT 114 143 3980 Antisense
GGAAGAATTGGCCAACGTTAACAAG 462 493 4056 Antisense
Sequence Source Affymetrix Proprietary Database