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[183476_at]

Description ZK250.7 /REP_DB=WormBase Gene ID /WP=CE15279 /TR=O17303 /GB=AAB71076.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 15.9
(-0.1)
A 		5.5
(-2.5)
A 		3.4
(-3)
A 		29
(3)
A 		26
B 4
(-3)
A 		10.6
(-1.3)
A 		6.4
(-2.4)
A 		27.5
(3)
A 		24
C 6.2
(-2.9)
A 		5.6
(-3)
A 		6.6
(-2.9)
A 		65.9
(3)
A 		60
avr 8.7
(-2.5) 		7.2
(-2.7) 		5.5
(-3) 		40.8
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 3.8
(-2.3)
A 		2.6
(-2.7)
A 		19.3
(3)
A 		2
(-2.9)
A 		1.7
(-3)
A 		3.7
(-2.3)
A 		18
B 7
(-2)
A 		4.7
(-2.4)
A 		31.6
(3)
A 		1.8
(-3)
A 		1.9
(-3)
A 		2.8
(-2.8)
A 		30
C 4.2
(-2.5)
A 		25.5
(3)
A 		6.9
(-1.8)
A 		2.3
(-3)
A 		2.4
(-3)
A 		5.1
(-2.3)
A 		23
avr 5
(-2) 		10.9
(0.1) 		19.3
(3) 		2
(-3) 		2
(-3) 		3.9
(-2.3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 5.8
(3)
A 		1.2
(-2.6)
A 		0.9
(-3)
A 		4.2
(1)
A 		5
B 1.3
(-3)
A 		2.6
(-1.3)
A 		1.5
(-2.7)
A 		5.9
(3)
A 		5
C 2.1
(-2.7)
A 		1.6
(-3)
A 		2.3
(-2.6)
A 		11.1
(3)
A 		10
avr 3.1
(-1.4) 		1.8
(-2.8) 		1.6
(-3) 		7.1
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.7
(-2.7)
A 		0.9
(-2.4)
A 		4.2
(3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		0.9
(-2.4)
A 		4
B 2.4
(-1.4)
A 		1.6
(-2.1)
A 		7.7
(3)
A 		0.5
(-3)
A 		0.8
(-2.8)
A 		1
(-2.6)
A 		7
C 1.6
(-2.1)
A 		7.8
(3)
A 		1.8
(-1.9)
A 		0.5
(-3)
A 		0.8
(-2.8)
A 		1.7
(-2)
A 		7
avr 1.6
(-1.4) 		3.4
(1.2) 		4.6
(3) 		0.5
(-3) 		0.7
(-2.7) 		1.2
(-2) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183476_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5137
Sequence Type Exemplar sequence
Representative Public ID ZK250.7 NCBI
Target Description ZK250.7 /REP_DB=WormBase Gene ID /WP=CE15279 /TR=O17303 /GB=AAB71076.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061737(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061737 NCBI Caenorhabditis elegans ZK250.7 (ZK250.7) mRNA, complete cds. 11/11 None
SNAP00000013030 ENSEMBL cdna:SNAP chromosome:CEL140:II:1953681:1955669:-1 11/11 None
GENEFINDER00000013039 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1953681:1955669:-1 11/11 None
ZK250.7 ENSEMBL cdna:known chromosome:CEL140:II:1953681:1955669:-1 gene:ZK250.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1953679-1955668(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK250.7
Entrez Gene 191262 Entrez gene
SwissProt O17303 EMBL-EBI
WormBase CE15279 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71076 Hypothetical protein ZK250.7 [Caenorhabditis elegans] ref|NP_494138.1| ZK250.7 [Caenorhabditis elegans] 0.0
blast AAB93663 Hypothetical protein C16C4.13 [Caenorhabditis elegans] ref|NP_494111.2| C16C4.13 [Caenorhabditis elegans] 0.0
blast AAB70956 Hypothetical protein C46F9.2 [Caenorhabditis elegans] ref|NP_494117.1| C46F9.2 [Caenorhabditis elegans] 1.0E-143
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 3.2E-46
Pfam IPR002083 EMBL-EBI MATH 1.7E-18
Pfam IPR002083 EMBL-EBI MATH 4.1E-34
Pfam IPR002083 EMBL-EBI MATH 1.7E-18
Pfam IPR002083 EMBL-EBI MATH 4.1E-34
Sequence
Target Sequence 
>C. ELEGANS:183476_AT
tttggtgcaaaatctggtagtgtatttttaatttattgcaatggtatagaaaaagattat
gtgagcaatgacagtatcgatgtggaggttcgcgtgaaaataattgaagtcaaagatgta
ccatgcctagagaaatcatttgtactatcccatactatcaagaacatgtcaaatattaaa
gaaggagggagcatctttacggacattcaaacttggtttaacattccatggagaatgaaa
atcgaaaaacaaaatggatttctaggattatatcttcttcatgggaaaagccaacctgaa
tccaaaaaatcgtcaattgaacatgattttcaattgaaaatagtgtcaccaaatggaaaa
attttatcgattgaaagaggtggtggcgttggctgggacatgttcctcagatgggatgtg
ttggaggaggattacctagtcaacgacaccatcatagtagaagctcgtgtgtggattcgg
aaaatgactggaatggaggatgttgagaagtttccgggattcgtgattccagtggggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGGTGCAAAATCTGGTAGTGTAT 221 559 697 Antisense
GTATCGATGTGGAGGTTCGCGTGAA 382 455 770 Antisense
GAAGTCAAAGATGTACCATGCCTAG 336 203 802 Antisense
GTACCATGCCTAGAGAAATCATTTG 547 457 814 Antisense
TAGGATTATATCTTCTTCATGGGAA 433 653 959 Antisense
ATGGGAAAAGCCAACCTGAATCCAA 50 51 977 Antisense
AAAGAGGTGGTGGCGTTGGCTGGGA 175 123 1070 Antisense
GTCAACGACACCATCATAGTAGAAG 80 465 1135 Antisense
CATAGTAGAAGCTCGTGTGTGGATT 59 213 1149 Antisense
GAAGTTTCCGGGATTCGTGATTCCA 425 335 1203 Antisense
CGGGATTCGTGATTCCAGTGGGGGA 281 243 1211 Antisense
Sequence Source Affymetrix Proprietary Database