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[183475_at] 7TM chemoreceptor, srw family

Description C33G8.1 /REP_DB=WormBase Gene ID /WP=CE06910 /TR=Q18402 /GB=AAC25847.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 15      6grp_total > 63      4grp_total > 01      6grp_cgc > 75      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 18.7
(-3)
A 		35.7
(-2)
P 		44.3
(-1.5)
A 		124.5
(3)
P 		106
B 33.2
(-1)
A 		17.4
(-3)
A 		58.1
(2.3)
P 		63.9
(3)
P 		47
C 42.2
(-2)
P 		36.3
(-2.2)
A 		18
(-3)
A 		162.9
(3)
P 		145
avr 31.4
(-2.9) 		29.8
(-3) 		40.1
(-2.3) 		117.1
(3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 26.3
(-1.5)
A 		27.4
(-1.4)
A 		70.9
(3)
P 		11.9
(-3)
A 		45.5
(0.4)
A 		38.7
(-0.3)
P 		59
B 32
(-2)
P 		26.7
(-3)
P 		54.6
(2.5)
P 		57.3
(3)
A 		52.9
(2.1)
P 		31.8
(-2)
A 		31
C 19.6
(-3)
A 		56.9
(2.4)
P 		32.3
(-1.2)
A 		61.4
(3)
M 		21.5
(-2.7)
A 		40
(-0.1)
A 		42
avr 26
(-3) 		37
(-0.5) 		52.6
(3) 		43.5
(0.9) 		40
(0.2) 		36.8
(-0.6) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 6.8
(-3)
A 		7.8
(-2.5)
P 		11.6
(-0.5)
A 		18.2
(3)
P 		11
B 10.6
(1.1)
A 		4.3
(-3)
A 		13.5
(2.9)
P 		13.6
(3)
P 		9
C 14
(-0.8)
P 		10.4
(-1.8)
A 		6.3
(-3)
A 		27.5
(3)
P 		21
avr 10.5
(-1.5) 		7.5
(-3) 		10.5
(-1.5) 		19.8
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 4.8
(-2.1)
A 		9.8
(0.3)
A 		15.4
(3)
P 		3
(-3)
A 		13.7
(2.2)
A 		9.4
(0.1)
P 		12
B 11.1
(-2)
P 		8.9
(-3)
P 		13.2
(-1)
P 		15.2
(-0)
A 		21.5
(3)
P 		11.9
(-1.6)
A 		13
C 7.3
(-2.8)
A 		17.4
(3)
P 		8.2
(-2.3)
A 		12.3
(0.1)
M 		7
(-3)
A 		13.4
(0.7)
A 		10
avr 7.7
(-3) 		12
(1) 		12.3
(1.3) 		10.2
(-0.7) 		14.1
(3) 		11.6
(0.7) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183475_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11970
Sequence Type Exemplar sequence
Representative Public ID C33G8.1 NCBI
Target Description C33G8.1 /REP_DB=WormBase Gene ID /WP=CE06910 /TR=Q18402 /GB=AAC25847.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072375
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000000547 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7015477:7017005:1 None
NM_072375 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-127) (srw-127) mRNA, complete cds. None
C33G8.1 ENSEMBL cdna:known chromosome:CEL140:V:7015510:7017005:1 gene:C33G8.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7015477-7017477(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-127
Ensembl C33G8.1
Entrez Gene 183173 Entrez gene
SwissProt Q18402 EMBL-EBI
WormBase CE34730 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC25847 Serpentine receptor, class w protein 127 [Caenorhabditis elegans] ref|NP_504776.2| Serpentine Receptor, class W family member (srw-127) [Caenorhabditis elegans] 0.0
blast AAC25847 Serpentine receptor, class w protein 127 [Caenorhabditis elegans] ref|NP_504776.2| Serpentine Receptor, class W family member (srw-127) [Caenorhabditis elegans] 3.0E-99
blast AAG24158 Serpentine receptor, class w protein 137 [Caenorhabditis elegans] ref|NP_503799.2| Serpentine Receptor, class W family member (srw-137) [Caenorhabditis elegans] 3.0E-66
blast AAG24167 Serpentine receptor, class w protein 136 [Caenorhabditis elegans] ref|NP_503821.2| Serpentine Receptor, class W family member (srw-136) [Caenorhabditis elegans] 2.0E-65
blast AAC69057 Serpentine receptor, class w protein 132 [Caenorhabditis elegans] ref|NP_504142.2| Serpentine Receptor, class W family member (srw-132) [Caenorhabditis elegans] 3.0E-29
blast AAC69063 Serpentine receptor, class w protein 133 [Caenorhabditis elegans] ref|NP_504144.2| Serpentine Receptor, class W family member (srw-133) [Caenorhabditis elegans] 1.0E-28
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504776.2 5 39-61,157-179,228-250,275-297,312-334
C33G8.1 5 39-61,157-179,228-250,275-297,312-334
GENEFINDER00000000547 5 50-72,84-106,168-190,215-237,252-274
Sequence
Target Sequence 
>C. ELEGANS:183475_AT
ttattttcgagactacacccagctttttttgaaaaacaatagtagattgctcaaactttg
gaactttgttaacgctctcgcatcttttattatcccatctgtcgcctttcctctagttac
catctttctaatcagagaacttttgaaagcggacaaaatgcggagaaaaatgacatctac
ttcgagcaaattgaaagagtcccggaatactacaaaagttgttgtatacaacaccatcat
attcagcatagttttattcccaatcggtgtcactatgggatttcagtatttgtttataga
aatcaaaggaataacacgaatttttgaatatctaggatttgttttttcaatgtttttttc
tgcaaacacaatgtctcatttcataatttgtcttttaatttcatcacaatataatgatac
tgcaaaattattgtgtacatgttgttgttgtgctcggaactttgaaaatgaaatcatgga
atttttccttctccttttcaccggtttccaacagagcattgtgaatttccacgttcattt
gacaaattttaattccttccttgtcaattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATTTTCGAGACTACACCCAGCTT 58 679 651 Antisense
TTGGAACTTTGTTAACGCTCTCGCA 703 699 708 Antisense
TTAACGCTCTCGCATCTTTTATTAT 261 685 719 Antisense
TTTCCTCTAGTTACCATCTTTCTAA 546 669 757 Antisense
ATGACATCTACTTCGAGCAAATTGA 294 45 820 Antisense
TACAACACCATCATATTCAGCATAG 141 643 877 Antisense
TTTTATTCCCAATCGGTGTCACTAT 600 675 902 Antisense
GTGTACATGTTGTTGTTGTGCTCGG 170 487 1083 Antisense
CTTTTCACCGGTTTCCAACAGAGCA 509 221 1144 Antisense
GAGCATTGTGAATTTCCACGTTCAT 581 387 1164 Antisense
ATTTTAATTCCTTCCTTGTCAATTG 273 13 1196 Antisense
Sequence Source Affymetrix Proprietary Database