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[183474_at]

Description F01G10.4 /REP_DB=WormBase Gene ID /WP=CE09166 /TR=O17765 /GB=CAB02895.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 60      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 7.2
(-2.3)
A 		3.4
(-3)
A 		38.4
(3)
A 		8.8
(-2.1)
A 		35
B 37.6
(2.9)
A 		38.1
(3)
A 		4.7
(-3)
A 		7.5
(-2.5)
A 		33
C 4.2
(-3)
A 		10.2
(1.1)
A 		12.9
(3)
A 		4.8
(-2.6)
A 		9
avr 16.3
(1.8) 		17.2
(2.2) 		18.7
(3) 		7
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 10.6
(-2.5)
A 		6.7
(-3)
A 		21.4
(-1.2)
A 		55.1
(3)
A 		9
(-2.7)
A 		9.2
(-2.7)
A 		48
B 3.5
(-3)
A 		6
(-2.6)
A 		29.9
(1.3)
A 		40.7
(3)
A 		21.9
(-0)
A 		8.2
(-2.2)
A 		37
C 4.9
(-3)
A 		8.2
(-2.6)
A 		9.8
(-2.3)
A 		49.1
(3)
A 		23.5
(-0.5)
A 		23.5
(-0.5)
A 		44
avr 6.3
(-3) 		7
(-2.9) 		20.4
(-1) 		48.3
(3) 		18.1
(-1.3) 		13.6
(-2) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.6
(-1.8)
A 		0.7
(-3)
A 		10
(3)
A 		1.3
(-2.6)
A 		9
B 12
(3)
A 		9.4
(1.6)
A 		1.1
(-3)
A 		1.6
(-2.7)
A 		11
C 1.4
(-2)
A 		2.9
(0.4)
A 		4.5
(3)
A 		0.8
(-3)
A 		4
avr 5.3
(3) 		4.3
(1.5) 		5.2
(2.9) 		1.2
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.9
(-3)
A 		2.4
(-2.8)
A 		4.7
(-1.6)
A 		14
(3)
A 		2.7
(-2.6)
A 		2.2
(-2.9)
A 		12
B 1.2
(-3)
A 		2
(-2.5)
A 		7.3
(0.8)
A 		10.8
(3)
A 		8.9
(1.8)
A 		3.1
(-1.8)
A 		10
C 1.8
(-3)
A 		2.5
(-2.5)
A 		2.5
(-2.5)
A 		9.9
(3)
A 		7.6
(1.3)
A 		7.9
(1.5)
A 		8
avr 1.6
(-3) 		2.3
(-2.6) 		4.8
(-1.1) 		11.6
(3) 		6.4
(-0.1) 		4.4
(-1.3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183474_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9771
Sequence Type Exemplar sequence
Representative Public ID F01G10.4 NCBI
Target Description F01G10.4 /REP_DB=WormBase Gene ID /WP=CE09166 /TR=O17765 /GB=CAB02895.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069473(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069473 NCBI Caenorhabditis elegans F01G10.4 (F01G10.4) mRNA, complete cds. 11/11 None
F01G10.4 ENSEMBL cdna:known chromosome:CEL140:IV:10231346:10232523:-1 gene:F01G10.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013157 8/11 Cross Hyb Matching Probes None
GENEFINDER00000013173 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10231351-10232529(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F01G10.4
Entrez Gene 184066 Entrez gene
SwissProt O17765 EMBL-EBI
WormBase CE09166 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02895 Hypothetical protein F01G10.4 [Caenorhabditis elegans] ref|NP_501874.1| F01G10.4 [Caenorhabditis elegans] 1.0E-138
Sequence
Target Sequence 
>C. ELEGANS:183474_AT
caaattggaaaaagccctgcacggggagaagttgatcgattcatgtggccgttattgttc
cttgttgaatgatcttttggatcgtcacgaagatgttgaaatgtttgacggatcagatga
aagtgtcaaattggaagtattaacaattctcaggaacaagagtgtggagttggcaaaatt
ccaaaacgaagaaatgactgaattcaataccgagttcatcagtaacctcccaaatcaatc
agtctgccaaaatttggattatatcaaaactgaaattggcaaattgaatcaaattcttca
cgaaatcaattcaaaaatcatcttcctgactccagtgagatcatggattttaattcctca
attaaaaactattttacaggaatattgggacaaaacagttactactgaaataagaaattt
aaaagcagaattgggagaaaccactgcaaacgttttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAATTGGAAAAAGCCCTGCACGGG 379 193 225 Antisense
CCCTGCACGGGGAGAAGTTGATCGA 658 257 239 Antisense
TCATGTGGCCGTTATTGTTCCTTGT 397 623 265 Antisense
ATTGTTCCTTGTTGAATGATCTTTT 525 5 278 Antisense
ATGATCTTTTGGATCGTCACGAAGA 171 45 293 Antisense
AATGACTGAATTCAATACCGAGTTC 147 155 417 Antisense
TACCGAGTTCATCAGTAACCTCCCA 549 645 432 Antisense
TAACCTCCCAAATCAATCAGTCTGC 459 637 447 Antisense
AATCATCTTCCTGACTCCAGTGAGA 296 171 540 Antisense
GATCATGGATTTTAATTCCTCAATT 254 421 563 Antisense
GGAGAAACCACTGCAAACGTTTTGC 352 517 658 Antisense
Sequence Source Affymetrix Proprietary Database