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[183473_at]

Description D2096.9 /REP_DB=WormBase Gene ID /WP=CE04307 /TR=Q19009 /GB=AAA81496.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 10      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 66      6grp_total > 50      4grp_total > 22      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1090
1 2 3 4 range
A 1397.6
(3)
P 		781.9
(-1.5)
P 		574.3
(-3)
P 		1332.1
(2.5)
P 		823
B 1612.5
(3)
P 		652.4
(-3)
P 		656.2
(-3)
P 		1566.2
(2.7)
P 		960
C 1405.1
(3)
P 		721.4
(-1.6)
P 		522.4
(-3)
P 		1401
(3)
P 		883
avr 1471.7
(3) 		718.6
(-2.1) 		584.3
(-3) 		1433.1
(2.7) 		887

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 900
1 2 3 4 5 6 range
A 1721.7
(3)
P 		1169.7
(-1)
P 		1560.8
(1.8)
P 		1156.6
(-1.1)
P 		1161.9
(-1.1)
P 		899.2
(-3)
P 		823
B 1559.6
(1.1)
P 		1481.6
(0.3)
P 		1710.4
(2.6)
P 		1753.9
(3)
P 		1154.4
(-3)
P 		1182.2
(-2.7)
P 		600
C 1382.9
(1.2)
P 		1510.6
(2.2)
P 		1146.4
(-0.7)
P 		1609
(3)
P 		853.5
(-3)
P 		1155.3
(-0.6)
P 		756
avr 1554.7
(3) 		1387.3
(1) 		1472.5
(2) 		1506.5
(2.4) 		1056.6
(-3) 		1078.9
(-2.7) 		498
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 364
1 2 3 4 range
A 508.9
(3)
P 		169.7
(-2.7)
P 		150.1
(-3)
P 		195
(-2.2)
P 		359
B 514.2
(3)
P 		161.1
(-2.9)
P 		152.1
(-3)
P 		333.8
(0)
P 		362
C 465.1
(3)
P 		207.4
(-2.5)
P 		182.1
(-3)
P 		236.2
(-1.9)
P 		283
avr 496.1
(3) 		179.4
(-2.7) 		161.4
(-3) 		255
(-1.3) 		335

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 324
1 2 3 4 5 6 range
A 317.4
(-0)
P 		416
(3)
P 		339.9
(0.7)
P 		293.3
(-0.7)
P 		350.6
(1)
P 		218.9
(-3)
P 		197
B 542.7
(3)
P 		493.1
(0.7)
P 		415.3
(-3)
P 		464.6
(-0.7)
P 		469
(-0.5)
P 		440.8
(-1.8)
P 		127
C 512.6
(3)
P 		460.9
(1.7)
P 		291.8
(-2.6)
P 		323.6
(-1.8)
P 		276.2
(-3)
P 		386.7
(-0.2)
P 		236
avr 457.6
(3) 		456.7
(3) 		349
(-3) 		360.5
(-2.4) 		365.3
(-2.1) 		348.8
(-3) 		109
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183473_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9240
Sequence Type Exemplar sequence
Representative Public ID D2096.9 NCBI
Target Description D2096.9 /REP_DB=WormBase Gene ID /WP=CE04307 /TR=Q19009 /GB=AAA81496.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069023(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069023 NCBI Caenorhabditis elegans D2096.9 (D2096.9) mRNA, complete cds. 11/11 None
SNAP00000025676 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8381938:8382774:-1 11/11 None
GENEFINDER00000025688 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8381938:8382774:-1 11/11 None
D2096.9 ENSEMBL cdna:known chromosome:CEL140:IV:8381938:8382774:-1 gene:D2096.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8381943-8382780(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2096.9
Entrez Gene 183967 Entrez gene
SwissProt Q19009 EMBL-EBI
WormBase CE04307 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_501424 D2096.9 [Caenorhabditis elegans] gb|AAA81496.1| Hypothetical protein D2096.9 [Caenorhabditis elegans] 1.0E-43
blast CAE73740 Hypothetical protein CBG21268 [Caenorhabditis briggsae] 3.0E-28
blast AAB70670 Hypothetical protein K09C6.3 [Caenorhabditis elegans] ref|NP_503342.1| K09C6.3 [Caenorhabditis elegans] 2.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501424.1 1 5-24
D2096.9 1 5-24
SNAP00000025676 1 5-24
GENEFINDER00000025688 1 5-24
Sequence
Target Sequence 
>C. ELEGANS:183473_AT
actccacatcaatcgcagcttggcttctcgtccttattctcggaattgtttccagtcagc
cattgtttgggcttgaaaagcaattgctatattcgttccaggaccctgatgaattcgaaa
tcatcaataagagatcaccattgctaagtcttgttggttcaaatgttcgtttcacagaac
cattctggcaacgcgttcaaaataagaagaaaatccgttcggttgcagttgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCCACATCAATCGCAGCTTGGCT 127 99 17 Antisense
CTTCTCGTCCTTATTCTCGGAATTG 53 221 40 Antisense
TTCTCGGAATTGTTTCCAGTCAGCC 621 691 53 Antisense
GTTTCCAGTCAGCCATTGTTTGGGC 589 451 64 Antisense
AATTGCTATATTCGTTCCAGGACCC 331 177 98 Antisense
TCCAGGACCCTGATGAATTCGAAAT 377 589 113 Antisense
GAGATCACCATTGCTAAGTCTTGTT 179 397 147 Antisense
TTGTTGGTTCAAATGTTCGTTTCAC 557 703 167 Antisense
ATGTTCGTTTCACAGAACCATTCTG 161 45 179 Antisense
AACCATTCTGGCAACGCGTTCAAAA 466 145 194 Antisense
GAAAATCCGTTCGGTTGCAGTTGAC 330 351 225 Antisense
Sequence Source Affymetrix Proprietary Database