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[183472_at]

Description C05C12.6 /REP_DB=WormBase Gene ID /WP=CE02969 /TR=Q17650 /GB=CAA92724.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 92      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_highest_nonorm > 91      6grp_total > 84      4grp_total > 03      6grp_high1_sub > 04_05      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 684
1 2 3 4 range
A 182.8
(-2.1)
P 		137.5
(-2.6)
P 		94.5
(-3)
P 		704.4
(3)
P 		610
B 192.7
(-2.4)
P 		126.3
(-3)
P 		167
(-2.6)
P 		778.4
(3)
P 		652
C 207
(-2)
P 		153.8
(-2.6)
P 		119.1
(-3)
P 		656.4
(3)
P 		537
avr 194.2
(-2.3) 		139.2
(-2.9) 		126.9
(-3) 		713.1
(3) 		586

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 181
1 2 3 4 5 6 range
A 188.3
(-3)
P 		194.2
(-2.5)
P 		253.1
(3)
P 		196.5
(-2.2)
P 		248.2
(2.5)
P 		227.5
(0.6)
P 		65
B 169.3
(-3)
P 		229.4
(1.1)
P 		221.6
(0.6)
P 		198.7
(-1)
P 		257.4
(3)
P 		233.2
(1.4)
P 		88
C 160.5
(-0.9)
P 		229.8
(1.4)
P 		98.3
(-3)
P 		279.1
(3)
P 		184.2
(-0.1)
P 		198.9
(0.3)
P 		181
avr 172.7
(-3) 		217.8
(1.7) 		191
(-1.1) 		224.8
(2.5) 		229.9
(3) 		219.9
(2) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 66.6
(0.2)
P 		29.8
(-2.6)
P 		24.7
(-3)
P 		103.1
(3)
P 		78
B 61.4
(-1.7)
P 		31.2
(-3)
P 		38.7
(-2.7)
P 		165.9
(3)
P 		135
C 68.5
(-0.7)
P 		44.2
(-2.8)
P 		41.5
(-3)
P 		110.7
(3)
P 		69
avr 65.5
(-1) 		35.1
(-3) 		35
(-3) 		126.6
(3) 		92

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 34.7
(-3)
P 		69.1
(2.1)
P 		55.1
(0)
P 		49.8
(-0.7)
P 		74.9
(3)
P 		55.4
(0.1)
P 		40
B 58.9
(-2.3)
P 		76.4
(-0.3)
P 		53.8
(-2.9)
P 		52.6
(-3)
P 		104.6
(3)
P 		87
(1)
P 		52
C 59.5
(1.6)
P 		70.1
(3)
P 		25
(-3)
P 		56.1
(1.1)
P 		59.6
(1.6)
P 		66.6
(2.5)
P 		45
avr 51
(-1.9) 		71.9
(1.7) 		44.6
(-3) 		52.8
(-1.6) 		79.7
(3) 		69.7
(1.3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183472_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9164
Sequence Type Exemplar sequence
Representative Public ID C05C12.6 NCBI
Target Description C05C12.6 /REP_DB=WormBase Gene ID /WP=CE02969 /TR=Q17650 /GB=CAA92724.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069708(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069708 NCBI Caenorhabditis elegans C05C12.6 (C05C12.6) mRNA, complete cds. 11/11 None
SNAP00000019474 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11232260:11233094:-1 11/11 None
GENEFINDER00000019486 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11232260:11233094:-1 11/11 None
C05C12.6 ENSEMBL cdna:known chromosome:CEL140:IV:11232260:11233094:-1 gene:C05C12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11232265-11233100(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05C12.6
Entrez Gene 182253 Entrez gene
SwissProt Q17650 EMBL-EBI
WormBase CE02969 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92724 Hypothetical protein C05C12.6 [Caenorhabditis elegans] ref|NP_502109.1| C05C12.6 [Caenorhabditis elegans] 8.0E-85
blast CAE62028 Hypothetical protein CBG06040 [Caenorhabditis briggsae] 1.0E-81
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502109.1 4 12-34,49-66,73-95,122-144
C05C12.6 4 12-34,49-66,73-95,122-144
SNAP00000019474 4 12-34,49-66,73-95,122-144
GENEFINDER00000019486 4 12-34,49-66,73-95,122-144
Sequence
Target Sequence 
>C. ELEGANS:183472_AT
acgggaacccaactatgtctgatttggtacatcttaacttctgctctctcattgttgttt
ggaatgagatccacgtgcacatggttgattgttccaatttgtgtagttggattgggaatg
tacgcattctattcaaagcggcataaattcttatatccattcctgattatcacagttgta
caacaattggtatgtatgctcatggcaactattattacgatattctcattgtgcagtttc
gatacgatgcttgctattattggtcatacactggatatggcggagccaccatcaaaaact
ctcgcactatttgttgtttgtggaacagtttcggcatgtattctactttcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGGGAACCCAACTATGTCTGATTT 591 95 79 Antisense
TTGGTACATCTTAACTTCTGCTCTC 79 709 102 Antisense
TTCTGCTCTCTCATTGTTGTTTGGA 153 695 117 Antisense
GAGATCCACGTGCACATGGTTGATT 177 397 144 Antisense
CTTATATCCATTCCTGATTATCACA 348 221 228 Antisense
ATTCTCATTGTGCAGTTTCGATACG 687 9 300 Antisense
GATACGATGCTTGCTATTATTGGTC 418 423 319 Antisense
ATACACTGGATATGGCGGAGCCACC 306 25 344 Antisense
CGGAGCCACCATCAAAAACTCTCGC 597 241 359 Antisense
AACTCTCGCACTATTTGTTGTTTGT 387 141 375 Antisense
GTTTCGGCATGTATTCTACTTTCAT 623 449 406 Antisense
Sequence Source Affymetrix Proprietary Database