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[183471_at]

Description C03G6.4 /REP_DB=WormBase Gene ID /WP=CE07878 /TR=O01455 /GB=AAB52304.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 75      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 32.4
(-3)
A 		38.6
(-1.9)
A 		50.3
(0.2)
A 		65.6
(3)
A 		33
B 48.5
(-0.1)
A 		51.2
(0.6)
A 		37.4
(-3)
A 		60.1
(3)
A 		23
C 32.6
(-1.4)
A 		43.3
(0.2)
A 		22.2
(-3)
A 		61.5
(3)
M 		39
avr 37.8
(-2.7) 		44.4
(-1.2) 		36.6
(-3) 		62.4
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 48.7
(3)
A 		6.3
(-3)
A 		27.9
(0.1)
A 		22.9
(-0.7)
A 		17.7
(-1.4)
A 		40
(1.8)
A 		42
B 3
(-3)
A 		22
(-0.9)
A 		39.3
(0.9)
A 		58.3
(3)
A 		22.1
(-0.9)
A 		33.9
(0.4)
A 		55
C 7.8
(-3)
A 		28.6
(1.6)
A 		9.6
(-2.6)
A 		21.8
(0.1)
A 		21.9
(0.1)
A 		35.1
(3)
A 		27
avr 19.8
(-2.7) 		19
(-3) 		25.6
(-0.7) 		34.3
(2.3) 		20.6
(-2.4) 		36.3
(3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 11.8
(1.3)
A 		8.4
(-3)
A 		13.1
(3)
A 		9.6
(-1.5)
A 		5
B 15.5
(3)
A 		12.6
(0.4)
A 		8.7
(-3)
A 		12.8
(0.6)
A 		7
C 10.8
(0.8)
A 		12.5
(3)
A 		7.8
(-3)
A 		10.4
(0.3)
M 		5
avr 12.7
(3) 		11.2
(-0.2) 		9.9
(-3) 		10.9
(-0.9) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 9
(2.4)
A 		2.2
(-3)
A 		6.1
(0.1)
A 		5.8
(-0.1)
A 		5.3
(-0.5)
A 		9.7
(3)
A 		8
B 1.1
(-3)
A 		7.3
(-0.4)
A 		9.6
(0.5)
A 		15.5
(3)
A 		9
(0.3)
A 		12.6
(1.8)
A 		14
C 2.9
(-2.7)
A 		8.7
(1.1)
A 		2.4
(-3)
A 		4.4
(-1.7)
A 		7.1
(0)
A 		11.7
(3)
A 		9
avr 4.3
(-3) 		6.1
(-1.5) 		6
(-1.5) 		8.6
(0.7) 		7.1
(-0.6) 		11.3
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183471_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12147
Sequence Type Exemplar sequence
Representative Public ID C03G6.4 NCBI
Target Description C03G6.4 /REP_DB=WormBase Gene ID /WP=CE07878 /TR=O01455 /GB=AAB52304.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000031559 ENSEMBL cdna:SNAP chromosome:CEL140:V:7372747:7374677:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7372352-7372930(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52303 Serpentine receptor, class j protein 14 [Caenorhabditis elegans] ref|NP_504884.1| Serpentine Receptor, class J family member (srj-14) [Caenorhabditis elegans] 1.0E-132
blast NP_504896 Serpentine Receptor, class J family member (srj-13) [Caenorhabditis elegans] gb|AAK72300.1| Serpentine receptor, class j protein 13 [Caenorhabditis elegans] 3.0E-90
blast CAE74619 Hypothetical protein CBG22410 [Caenorhabditis briggsae] 3.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.5E-6
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 2.2E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000031559 4 63-85,100-122,184-206,221-243
Sequence
Target Sequence 
>C. ELEGANS:183471_AT
tgcgtctgcgcgactttggagaaaaagtagaccagctcgatatggataagaaaaatgaac
tgagggagtttgagagatcttgtgattctctaaacacttgcttctctagtctccgatgcc
ggccaaaatccaatgatttttccaaatgtagtgacaagctcaccgaaaaaaagtcagagt
gtttcgacaactgggaccctcttccaaatgggattcatacagaagaggacgcaaagaaga
ttcagaaaatgagagaagaagcatgtaagacatatttcggaaaagatgactgcttgaaga
aagagattacggaaacatgcggtcaaaaagaatggaaaaaatttcgtgaggtatggatat
caacaagttttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGTCTGCGCGACTTTGGAGAAAA 378 583 23 Antisense
AAAGTAGACCAGCTCGATATGGATA 284 121 46 Antisense
GGGAGTTTGAGAGATCTTGTGATTC 570 495 86 Antisense
TGATTCTCTAAACACTTGCTTCTCT 483 563 105 Antisense
TCTAAACACTTGCTTCTCTAGTCTC 160 613 111 Antisense
TCCGATGCCGGCCAAAATCCAATGA 637 593 134 Antisense
AAATGTAGTGACAAGCTCACCGAAA 108 121 166 Antisense
AAAGTCAGAGTGTTTCGACAACTGG 391 113 192 Antisense
ACTGGGACCCTCTTCCAAATGGGAT 589 95 212 Antisense
GAGATTACGGAAACATGCGGTCAAA 403 395 325 Antisense
GAGGTATGGATATCAACAAGTTTTG 468 401 370 Antisense
Sequence Source Affymetrix Proprietary Database