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[183470_at] peptidase (A1 pepsin family)

Description Y39B6B.G /REP_DB=WormBase Gene ID /WP=CE21681 /TR=Q9TVS4 /GB=CAB60912.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 40      4grp_highest_8_8 > 08      4grp_high_8_8 > 53      6grp_highest_nonorm > 09      6grp_total > 51      4grp_total > 59      6grp_highest_sub > 03      6grp_cgc > 93      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13899
1 2 3 4 range
A 30871.7
(-2)
P 		37946.8
(3)
P 		36899.8
(2.3)
P 		29375.2
(-3)
P 		8572
B 31360.2
(1.1)
P 		33426.4
(2.3)
P 		34512.2
(3)
P 		24581.5
(-3)
P 		9931
C 29189.5
(1.1)
P 		31647.3
(3)
P 		28329.2
(0.4)
P 		24047.5
(-3)
P 		7600
avr 30473.8
(0.2) 		34340.2
(3) 		33247.1
(2.2) 		26001.4
(-3) 		8339

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20213
1 2 3 4 5 6 range
A 42143.7
(3)
P 		30702.5
(-2.1)
P 		38438.5
(1.4)
P 		36769.8
(0.6)
P 		28657
(-3)
P 		31138.1
(-1.9)
P 		13487
B 30312.1
(-0)
P 		29148.8
(-0.5)
P 		37942.6
(3)
P 		31269.9
(0.4)
P 		24557.6
(-2.3)
P 		22759.2
(-3)
P 		15183
C 28490.7
(-0.9)
P 		31760.9
(0.2)
P 		40484.7
(3)
P 		38568.2
(2.4)
P 		29101.7
(-0.7)
P 		21930.7
(-3)
P 		18554
avr 33648.8
(0.7) 		30537.4
(-0.7) 		38955.3
(3) 		35536
(1.5) 		27438.8
(-2.1) 		25276
(-3) 		13679
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7186
1 2 3 4 range
A 11240.4
(3)
P 		8237.2
(0.4)
P 		9646.3
(1.6)
P 		4300
(-3)
P 		6940
B 10000.5
(3)
P 		8255.5
(0.8)
P 		7997.3
(0.5)
P 		5238.3
(-3)
P 		4762
C 9662.5
(2.8)
P 		9098.8
(2.2)
P 		9873.6
(3)
P 		4054.8
(-3)
P 		5819
avr 10301.1
(3) 		8530.5
(1.2) 		9172.4
(1.8) 		4531
(-3) 		5770

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3578
1 2 3 4 5 6 range
A 7768.9
(-2.7)
P 		10919.3
(3)
P 		8371.1
(-1.6)
P 		9325.7
(0.1)
P 		8647.4
(-1.1)
P 		7581.1
(-3)
P 		3338
B 10547.1
(3)
P 		9702.4
(0.8)
P 		9213.6
(-0.5)
P 		8282.3
(-3)
P 		9977.4
(1.5)
P 		8486.8
(-2.5)
P 		2265
C 10560.3
(3)
P 		9691.2
(1.4)
P 		10304
(2.5)
P 		7756.1
(-2.2)
P 		9416.9
(0.9)
P 		7341.5
(-3)
P 		3219
avr 9625.4
(1.8) 		10104.3
(3) 		9296.2
(0.9) 		8454.7
(-1.3) 		9347.2
(1) 		7803.1
(-3) 		2301
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183470_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19441
Sequence Type Exemplar sequence
Representative Public ID Y39B6B.G NCBI
Target Description Y39B6B.G /REP_DB=WormBase Gene ID /WP=CE21681 /TR=Q9TVS4 /GB=CAB60912.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171587(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171587 NCBI Caenorhabditis elegans ASpartyl Protease family member (asp-1) (asp-1) mRNA, complete cds. 11/11 None
SNAP00000030543 ENSEMBL cdna:SNAP chromosome:CEL140:V:19052135:19053325:-1 11/11 None
GENEFINDER00000030704 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19052135:19053325:-1 11/11 None
Y39B6A.20.4 ENSEMBL cdna:known chromosome:CEL140:V:19051628:19053325:-1 gene:Y39B6A.20 11/11 None
Y39B6A.20.5 ENSEMBL cdna:known chromosome:CEL140:V:19051819:19053325:-1 gene:Y39B6A.20 11/11 None
Y39B6A.20.1 ENSEMBL cdna:known chromosome:CEL140:V:19051819:19053325:-1 gene:Y39B6A.20 11/11 None
Y39B6A.20.2 ENSEMBL cdna:known chromosome:CEL140:V:19051819:19053325:-1 gene:Y39B6A.20 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19052134-19053325(-) 100.0 100.0
Public Domain and Genome References
Gene Title peptidase (A1 pepsin family)
Gene Symbol asp-1
Ensembl Y39B6A.20
Entrez Gene 180251 Entrez gene
SwissProt Q9TVS4 EMBL-EBI
WormBase CE21681 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
30163 protein catabolism inferred from sequence similarity QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5623 cell inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4190 aspartic-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
4194 pepsin A activity inferred from electronic annotation QuickGO AmiGO
4175 endopeptidase activity inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC51056 Hypothetical protein Y39B6A.20 [Caenorhabditis elegans] ref|NP_741677.1| ASpartyl Protease family member (asp-1) [Caenorhabditis elegans] gb|AAF19442.1| aspartic protease 1 [Caenorhabditis elegans] gb|AAF19445.1| aspartic protease 1 [Caenorhabditis elegans] 0.0
blast CAA08899 aspartic protease [Caenorhabditis elegans] 0.0
blast CAE72985 Hypothetical protein CBG20329 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001461 EMBL-EBI Peptidase A1, pepsin 2.9E-98
Sequence
Target Sequence 
>C. ELEGANS:183470_AT
agaacctcatcgcccaaaagcaattggacgctccactcttcactgtctggcttgaccgca
acctccagatcgcccaaggaaccccaggaggtctcatcacctacggagccatcgacaccg
tcaactgcgccaagcaagtcacctacgttccattgagcgccaagacctactggcaattcc
cactcgacgcgttcgcagtcggaacctactctgagaccaagaaggatcaagtcatctccg
acaccggaacctcatggctcggagcaccaaacaccatcgtctccgccatcgtcaagcaga
ccaaggccgtcttcgactggtccaccgagctttacaccgtcgactgctccaccatgaaga
cccagccagacctcatcttcaccatcggaggagcccaattcccagtcaagtctgtcgagt
acgtccttgaccttcaactcggaggtggaaagtgcgctctcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAACCTCATCGCCCAAAAGCAATT 562 73 605 Antisense
AAAAGCAATTGGACGCTCCACTCTT 130 133 620 Antisense
CAAGGAACCCCAGGAGGTCTCATCA 394 183 679 Antisense
TCAACTGCGCCAAGCAAGTCACCTA 242 631 725 Antisense
GCGCCAAGACCTACTGGCAATTCCC 545 287 761 Antisense
TCGCAGTCGGAACCTACTCTGAGAC 65 601 797 Antisense
AACCTCATGGCTCGGAGCACCAAAC 709 145 852 Antisense
TCAAGCAGACCAAGGCCGTCTTCGA 478 629 896 Antisense
CTTCACCATCGGAGGAGCCCAATTC 613 211 981 Antisense
CAGTCAAGTCTGTCGAGTACGTCCT 477 207 1007 Antisense
TCGGAGGTGGAAAGTGCGCTCTCGC 151 607 1043 Antisense
Sequence Source Affymetrix Proprietary Database