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[183469_at]

Description T16A1.8 /REP_DB=WormBase Gene ID /WP=CE13716 /TR=P91449 /GB=AAB37877.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 29.4
(1.2)
A 		39.9
(3)
A 		4.9
(-3)
A 		10.1
(-2.1)
A 		35
B 14.7
(-3)
A 		21.5
(-0.9)
A 		33.9
(3)
A 		26.9
(0.8)
A 		19
C 7.5
(-2.7)
A 		5.4
(-3)
A 		8.9
(-2.6)
A 		52.3
(3)
A 		47
avr 17.2
(-2.4) 		22.3
(-0.2) 		15.9
(-3) 		29.8
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 9.7
(-2.5)
A 		24.5
(-1)
A 		4.9
(-3)
A 		34.9
(0.1)
A 		16.2
(-1.8)
A 		62.9
(3)
P 		58
B 11.1
(-2.6)
A 		23.8
(-1.5)
A 		6.5
(-3)
A 		35.6
(-0.5)
A 		10.9
(-2.6)
A 		75.6
(3)
P 		69
C 14.2
(-2)
A 		6.4
(-2.7)
A 		55.6
(1.8)
A 		2.8
(-3)
A 		19.1
(-1.5)
A 		69.3
(3)
P 		67
avr 11.7
(-3) 		18.2
(-2.3) 		22.3
(-1.9) 		24.4
(-1.7) 		15.4
(-2.6) 		69.3
(3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 10.7
(3)
A 		8.7
(1.7)
A 		1.3
(-3)
A 		1.5
(-2.9)
A 		9
B 4.7
(-3)
A 		5.3
(-1.9)
A 		7.9
(3)
A 		5.7
(-1.1)
A 		3
C 2.5
(-2.3)
A 		1.6
(-3)
A 		3.1
(-1.8)
A 		8.8
(3)
A 		7
avr 6
(3) 		5.2
(0.5) 		4.1
(-3) 		5.3
(0.8) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 1.8
(-2.7)
A 		8.7
(0.2)
A 		1.1
(-3)
A 		8.8
(0.3)
A 		4.9
(-1.4)
A 		15.3
(3)
P 		14
B 3.8
(-2.5)
A 		7.9
(-1.6)
A 		1.6
(-3)
A 		9.4
(-1.2)
A 		4.4
(-2.4)
A 		28.2
(3)
P 		27
C 5.3
(-1.8)
A 		1.9
(-2.7)
A 		14.2
(0.6)
A 		0.6
(-3)
A 		6.2
(-1.5)
A 		23.2
(3)
P 		23
avr 3.6
(-3) 		6.2
(-2.2) 		5.6
(-2.4) 		6.3
(-2.1) 		5.2
(-2.5) 		22.2
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183469_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5687
Sequence Type Exemplar sequence
Representative Public ID T16A1.8 NCBI
Target Description T16A1.8 /REP_DB=WormBase Gene ID /WP=CE13716 /TR=P91449 /GB=AAB37877.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061777(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061777 NCBI Caenorhabditis elegans T16A1.8 (T16A1.8) mRNA, complete cds. 11/11 None
GENEFINDER00000022096 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2087044:2093850:-1 9/11 None
T16A1.8 ENSEMBL cdna:known chromosome:CEL140:II:2091744:2093850:-1 gene:T16A1.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022091 2/11 Cross Hyb Matching Probes None
SNAP00000022092 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2091742-2093849(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T16A1.8
Entrez Gene 188547 Entrez gene
SwissProt P91449 EMBL-EBI
WormBase CE13716 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37877 Hypothetical protein T16A1.8 [Caenorhabditis elegans] ref|NP_494178.1| T16A1.8 [Caenorhabditis elegans] 0.0
blast AAB37876 Prion-like-(q/n-rich)-domain-bearing protein protein 66 [Caenorhabditis elegans] ref|NP_494177.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-66) [Caenorhabditis elegans] 1.0E-159
blast NP_494204 C33C12.5 [Caenorhabditis elegans] gb|AAB66057.1| Hypothetical protein C33C12.5 [Caenorhabditis elegans] 3.0E-90
blast AAB37877 Hypothetical protein T16A1.8 [Caenorhabditis elegans] ref|NP_494178.1| T16A1.8 [Caenorhabditis elegans] 2.0E-89
blast AAC24437 Hypothetical protein W03B1.2 [Caenorhabditis elegans] ref|NP_500541.2| W03B1.2 [Caenorhabditis elegans] 2.0E-77
blast CAB60509 Hypothetical protein Y56A3A.15 [Caenorhabditis elegans] ref|NP_499547.1| Y56A3A.15 [Caenorhabditis elegans] 9.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.1E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000022096 5 607-626,638-660,696-718,731-753,778-800
Sequence
Target Sequence 
>C. ELEGANS:183469_AT
gtgtttgagttttgtgaacgttccaaaaagtaaatcgattctcattcagaatctggaaga
attacaatttaacgtttcaaaagttacacttaacgagatagtacttgtcaactgttccac
aattaccatagacaatcaagtaatttccgacaagaacttgaatcttttcataaagcattg
gattaaaggatccaactgccaactcaaatcgtttgagtaccacattcggccaaccgaaag
actgcgatttgtggaagtttcactttttgaaggtatcggttacatggaaaaagaagagga
tgatcactggaaacgattcgaaatcaagagaaacgacggaacaaaagcgactgtcttatt
atcaaaaaccgattacatttcgtttgtcataagtcctggaagccatactccagtcaggaa
tgaagttgaaattggaaaagtcgaagttcgaacatacatcgtatcgaaagatggaataca
aaccgatcctgagaaaattaaagctgtttcgaagtttccccaaccgaagaatgtgatgga
tgtttgtctttctatcgacgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTTTGAGTTTTGTGAACGTTCCA 72 487 519 Antisense
GATAGTACTTGTCAACTGTTCCACA 451 425 615 Antisense
GTCAACTGTTCCACAATTACCATAG 561 463 625 Antisense
ATCGTTTGAGTACCACATTCGGCCA 276 33 726 Antisense
CGGCCAACCGAAAGACTGCGATTTG 316 239 745 Antisense
GACGGAACAAAAGCGACTGTCTTAT 80 377 853 Antisense
AAACCGATTACATTTCGTTTGTCAT 256 125 884 Antisense
CGTTTGTCATAAGTCCTGGAAGCCA 698 245 899 Antisense
GGAAGCCATACTCCAGTCAGGAATG 120 531 916 Antisense
GAAGTTTCCCCAACCGAAGAATGTG 376 335 1029 Antisense
GGATGTTTGTCTTTCTATCGACGAT 60 515 1056 Antisense
Sequence Source Affymetrix Proprietary Database