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[183467_at]

Description C50F4.12 /REP_DB=WormBase Gene ID /WP=CE05476 /TR=Q18746 /GB=CAA94746.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 85      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_highest_nonorm > 90      6grp_total > 75      4grp_total > 29      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 103
(0.1)
P 		123.8
(3)
P 		81
(-3)
P 		119.1
(2.3)
P 		43
B 125
(2.8)
P 		85.5
(-2)
P 		77.1
(-3)
P 		127
(3)
P 		50
C 147.2
(3)
P 		99.8
(-1.2)
P 		80.2
(-3)
P 		139.9
(2.3)
P 		67
avr 125.1
(2.6) 		103
(-0.1) 		79.4
(-3) 		128.7
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 90
(-1.5)
P 		70.2
(-3)
P 		120.7
(0.9)
P 		94.1
(-1.2)
P 		148.7
(3)
P 		92.2
(-1.3)
P 		79
B 104.9
(-2.5)
P 		99.2
(-2.8)
P 		178.9
(1.9)
P 		142.4
(-0.3)
P 		95.6
(-3)
P 		198.2
(3)
P 		103
C 85.8
(-3)
P 		97.8
(-2.1)
P 		95.9
(-2.2)
P 		121.2
(-0.4)
P 		113.2
(-1)
P 		166.2
(3)
P 		80
avr 93.6
(-2.6) 		89.1
(-3) 		131.8
(1.1) 		119.2
(-0.1) 		119.2
(-0.1) 		152.2
(3) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 37.5
(3)
P 		26.9
(-0.2)
P 		21.2
(-1.9)
P 		17.4
(-3)
P 		20
B 39.9
(3)
P 		21.1
(-2.1)
P 		17.9
(-3)
P 		27.1
(-0.5)
P 		22
C 48.7
(3)
P 		28.7
(-1.8)
P 		28
(-1.9)
P 		23.6
(-3)
P 		25
avr 42
(3) 		25.6
(-2) 		22.4
(-3) 		22.7
(-2.9) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 16.6
(-3)
P 		25
(-1.2)
P 		26.3
(-0.9)
P 		23.9
(-1.5)
P 		44.9
(3)
P 		22.5
(-1.7)
P 		28
B 36.5
(-2.5)
P 		33
(-3)
P 		43.5
(-1.5)
P 		37.7
(-2.3)
P 		38.8
(-2.1)
P 		73.9
(3)
P 		41
C 31.8
(-1.6)
P 		29.8
(-2)
P 		24.4
(-3)
P 		24.4
(-3)
P 		36.6
(-0.7)
P 		55.6
(3)
P 		31
avr 28.3
(-3) 		29.3
(-2.7) 		31.4
(-2.2) 		28.7
(-2.9) 		40.1
(0.2) 		50.7
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183467_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12136
Sequence Type Exemplar sequence
Representative Public ID C50F4.12 NCBI
Target Description C50F4.12 /REP_DB=WormBase Gene ID /WP=CE05476 /TR=Q18746 /GB=CAA94746.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073059(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073059 NCBI Caenorhabditis elegans C50F4.12 (C50F4.12) mRNA, complete cds. 11/11 None
SNAP00000009312 ENSEMBL cdna:SNAP chromosome:CEL140:V:9538217:9542319:-1 11/11 None
GENEFINDER00000009330 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9540744:9542319:-1 11/11 None
C50F4.12 ENSEMBL cdna:known chromosome:CEL140:V:9540670:9542319:-1 gene:C50F4.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9540743-9542319(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50F4.12
Entrez Gene 179336 Entrez gene
SwissProt Q18746 EMBL-EBI
WormBase CE05476 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1623480_AT dm
DROSGENOME1:142738_AT dm
CHICKEN:GGA.6457.1.S1_AT MTERF domain containing 1 gga
CHICKEN:GGA.6457.2.S1_AT MTERF domain containing 1 gga
CHICKEN:GGAAFFX.12609.1.S1_S_AT MTERF domain containing 1 gga
HG-U133_PLUS_2:219363_S_AT MTERF domain containing 1 hs
HG-U133A:219363_S_AT MTERF domain containing 1 hs
HG-U133A_2:219363_S_AT MTERF domain containing 1 hs
HU35KSUBC:RC_N47204_AT MTERF domain containing 1 hs
U133_X3P:G7705587_3P_A_AT MTERF domain containing 1 hs
HG-U95C:62156_AT MTERF domain containing 1 hs
HG-U95C:62157_S_AT MTERF domain containing 1 hs
MG-U74AV2:160425_AT MTERF domain containing 1 mm
MOUSE430_2:1454116_A_AT MTERF domain containing 1 mm
MOUSE430A_2:1454116_A_AT MTERF domain containing 1 mm
MOE430A:1454116_A_AT MTERF domain containing 1 mm
MG-U74CV2:133699_AT MTERF domain containing 1 mm
MOE430B:1459262_AT MTERF domain containing 1 mm
MOUSE430_2:1459262_AT MTERF domain containing 1 mm
MU19KSUBA:TC16534_AT MTERF domain containing 1, mRNA (cDNA clone MGC:35743 IMAGE:2655114) mm
MU19KSUBB:TC26091_AT MTERF domain containing 1, mRNA (cDNA clone MGC:35743 IMAGE:2655114) mm
MU19KSUBB:TC29769_AT MTERF domain containing 1, mRNA (cDNA clone MGC:35743 IMAGE:2655114) mm
RG-U34B:RC_AA848807_AT CGI-12 protein rn
RAE230A:1373383_AT CGI-12 protein rn
RAT230_2:1373383_AT CGI-12 protein rn
Protein Similarities
Method ID Description E-Value
blast CAA94746 Hypothetical protein C50F4.12 [Caenorhabditis elegans] ref|NP_505460.1| C50F4.12 [Caenorhabditis elegans] 0.0
blast CAE72192 Hypothetical protein CBG19300 [Caenorhabditis briggsae] 0.0
blast CAE72192 Hypothetical protein CBG19300 [Caenorhabditis briggsae] 1.0E-163
blast AAH62080 Hypothetical protein LOC299514 [Rattus norvegicus] ref|NP_955419.1| hypothetical protein LOC299514 [Rattus norvegicus] 2.0E-39
Sequence
Target Sequence 
>C. ELEGANS:183467_AT
gattcacgattgggatggttacagcaacagttcaagttatcagcaaaagcgactagagaa
attatcgtcaaggaacctcgaattataatgtttggaactggaccaattgaacgacttgtt
aagatgtttaacaaagaactcaacttcactacaaatcaactaaaaatgttagtcatggag
gatccaagaatttttatgatggattctaaattggtatcgaagacctacaaatacgttcgc
gacgtcatgaaaatcaacaatgaaactattctggagcatccattcattcttcgatgctca
ttaagcgtcataaagtcaagacatgacttccttaaacgcctcggacgagcaaattatcag
ttggccgaaaaaaaagaatcgaaaattgatatttctgaagttaccgatccagaaggatct
tcaaaagaaagctgtgatcttgttagccttgaacattttttacatccttctgatgctggt
tttgcgatgcttgcggctaaaacatatcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCACGATTGGGATGGTTACAGC 169 431 790 Antisense
AACTCAACTTCACTACAAATCAACT 568 139 926 Antisense
AAGACCTACAAATACGTTCGCGACG 182 151 1009 Antisense
TCTGGAGCATCCATTCATTCTTCGA 85 609 1059 Antisense
CATTCTTCGATGCTCATTAAGCGTC 386 215 1074 Antisense
AAGACATGACTTCCTTAAACGCCTC 409 153 1107 Antisense
GCCTCGGACGAGCAAATTATCAGTT 611 279 1127 Antisense
GAAAGCTGTGATCTTGTTAGCCTTG 225 359 1216 Antisense
AGCCTTGAACATTTTTTACATCCTT 97 85 1234 Antisense
TGATGCTGGTTTTGCGATGCTTGCG 670 565 1260 Antisense
GATGCTTGCGGCTAAAACATATCCA 444 413 1275 Antisense
Sequence Source Affymetrix Proprietary Database