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[183466_at]

Description Y39B6B.X /REP_DB=WormBase Gene ID /WP=CE21699 /TR=Q9NET6 /GB=CAB60929.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 10      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 2.8
(-3)
A 		6.1
(1.6)
A 		3.5
(-2)
A 		7.1
(3)
A 		4
B 2.8
(-3)
A 		4
(-2.7)
A 		3
(-3)
A 		30.3
(3)
A 		28
C 4.8
(-2.2)
A 		3.5
(-2.7)
A 		2.9
(-3)
A 		16.8
(3)
A 		14
avr 3.5
(-2.8) 		4.5
(-2.4) 		3.1
(-3) 		18.1
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 7.6
(-1.6)
A 		3.2
(-3)
A 		8.8
(-1.2)
A 		12.8
(0)
A 		22.1
(3)
A 		4.7
(-2.5)
A 		19
B 8
(-2.7)
A 		8.9
(-2.6)
A 		5.8
(-3)
A 		50.1
(3)
A 		32.5
(0.6)
A 		7.2
(-2.8)
A 		44
C 2.4
(-3)
A 		7.3
(-2)
A 		3.1
(-2.9)
A 		20.9
(0.7)
A 		32.1
(3)
A 		26.4
(1.8)
A 		30
avr 6
(-3) 		6.5
(-2.8) 		5.9
(-3) 		27.9
(2.7) 		28.9
(3) 		12.8
(-1.2) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1
(-1.5)
A 		1.3
(3)
A 		0.9
(-3)
A 		1
(-1.5)
A 		0
B 0.9
(-2.8)
A 		1
(-2.7)
A 		0.7
(-3)
A 		6.5
(3)
A 		6
C 1.6
(-1)
A 		1
(-3)
A 		1
(-3)
A 		2.8
(3)
A 		2
avr 1.2
(-2.3) 		1.1
(-2.5) 		0.9
(-3) 		3.4
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.4
(-2.7)
A 		1.1
(-3)
A 		1.9
(-2.1)
A 		3.2
(-0.8)
A 		6.7
(3)
A 		1.1
(-3)
A 		6
B 2.8
(-2.3)
A 		3
(-2.2)
A 		1.4
(-3)
A 		13.3
(3)
A 		13.2
(2.9)
A 		2.7
(-2.3)
A 		12
C 0.9
(-2.9)
A 		2.2
(-2.1)
A 		0.8
(-3)
A 		4.2
(-0.9)
A 		10.4
(3)
A 		8.8
(2)
A 		10
avr 1.7
(-2.8) 		2.1
(-2.5) 		1.4
(-3) 		6.9
(0.8) 		10.1
(3) 		4.2
(-1.1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183466_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19438
Sequence Type Exemplar sequence
Representative Public ID Y39B6B.X NCBI
Target Description Y39B6B.X /REP_DB=WormBase Gene ID /WP=CE21699 /TR=Q9NET6 /GB=CAB60929.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171599(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171599 NCBI Caenorhabditis elegans Y39B6A.9 (Y39B6A.9) mRNA, complete cds. 11/11 None
SNAP00000030551 ENSEMBL cdna:SNAP chromosome:CEL140:V:19101306:19141559:1 11/11 None
GENEFINDER00000030695 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19139082:19141559:1 11/11 None
Y39B6A.9 ENSEMBL cdna:known chromosome:CEL140:V:19139082:19141559:1 gene:Y39B6A.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19139081-19141559(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39B6A.9
Entrez Gene 189735 Entrez gene
SwissProt Q9NET6 EMBL-EBI
WormBase CE21699 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC51068 Hypothetical protein Y39B6A.9 [Caenorhabditis elegans] ref|NP_741689.1| Y39B6A.9 [Caenorhabditis elegans] 1.0E-124
blast CAE73139 Hypothetical protein CBG20527 [Caenorhabditis briggsae] 1.0E-115
blast AAA29908 p48 eggshell protein 2.0E-12
Sequence
Target Sequence 
>C. ELEGANS:183466_AT
ggggctaccacaaggctttggacaagaagcacggcggttatgaagccgatcaaaccggtt
acggtggacacaacggaatgtcggattacggtaatgagcagggagcctacggacattatg
atgggaagtatggagaagctgggaaaaagtctggacaggagtactatgccaagggggatg
agcatggacatggagatgaggctcatgaaaagggactgaagaagaatggagacgcctatg
gtggaaagaagttctcctacttcacatctggctccggaccatatggatcataccaaaagg
gttactatggctccgatggatatgagcatgacgatcacaagagcaaatactcatcccata
acgaggataatgggttcaagaagggttatgatggtgctggagctggtcatgatgataagt
acactagctatgataaggaagacgccggccacaagaaacaccacgacaagtacgacatcg
gaaagtacggagccaagcagggaggctatgctaaacaaggacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGGCTACCACAAGGCTTTGGACAA 61 499 98 Antisense
GGGAGCCTACGGACATTATGATGGG 134 495 198 Antisense
GGACAGGAGTACTATGCCAAGGGGG 498 525 250 Antisense
AAGAAGTTCTCCTACTTCACATCTG 470 151 343 Antisense
ACATCTGGCTCCGGACCATATGGAT 692 105 361 Antisense
AAGGGTTACTATGGCTCCGATGGAT 12 157 394 Antisense
GAGCAAATACTCATCCCATAACGAG 622 389 438 Antisense
TGGTGCTGGAGCTGGTCATGATGAT 429 551 489 Antisense
TGATAAGGAAGACGCCGGCCACAAG 529 561 528 Antisense
GAAACACCACGACAAGTACGACATC 545 355 552 Antisense
GGGAGGCTATGCTAAACAAGGACAC 653 495 597 Antisense
Sequence Source Affymetrix Proprietary Database