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[183465_at]

Description M02F4.3 /REP_DB=WormBase Gene ID /WP=CE04764 /TR=Q21469 /GB=AAA83201.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 23      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 322
1 2 3 4 range
A 269.9
(3)
A 		81.2
(-3)
A 		138.4
(-1.2)
A 		169.7
(-0.2)
P 		189
B 319.8
(3)
A 		22.1
(-3)
A 		48.9
(-2.5)
A 		297.3
(2.5)
P 		298
C 344.1
(3)
P 		174.8
(-0.8)
A 		79.6
(-3)
A 		261.7
(1.1)
P 		265
avr 311.3
(3) 		92.7
(-2.9) 		89
(-3) 		242.9
(1.2) 		222

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 239
1 2 3 4 5 6 range
A 155
(-1)
A 		261.6
(3)
A 		118.6
(-2.4)
A 		102
(-3)
A 		170.2
(-0.4)
A 		136.7
(-1.7)
A 		160
B 195.4
(1.2)
A 		205.1
(1.6)
A 		167.7
(-0.1)
A 		235.5
(3)
A 		127.3
(-1.9)
A 		103
(-3)
A 		133
C 334.7
(3)
A 		256.5
(1)
A 		131.7
(-2.1)
A 		153.6
(-1.6)
A 		162.3
(-1.3)
A 		96
(-3)
A 		239
avr 228.4
(2.4) 		241.1
(3) 		139.3
(-1.7) 		163.7
(-0.6) 		153.3
(-1.1) 		111.9
(-3) 		129
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 98.3
(3)
A 		17.6
(-3)
A 		36.2
(-1.6)
A 		24.8
(-2.5)
P 		81
B 102
(3)
A 		5.5
(-3)
A 		11.3
(-2.6)
A 		63.3
(0.6)
P 		97
C 113.9
(3)
P 		50.3
(-1.4)
A 		27.7
(-3)
A 		44.1
(-1.9)
P 		86
avr 104.7
(3) 		24.5
(-3) 		25.1
(-3) 		44.1
(-1.5) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 28.6
(-2.8)
A 		93
(3)
A 		25.8
(-3)
A 		25.9
(-3)
A 		51.4
(-0.7)
A 		33.3
(-2.3)
A 		67
B 68
(2.9)
A 		68.3
(3)
A 		40.7
(-2.5)
A 		62.4
(1.8)
A 		51.7
(-0.3)
A 		38.4
(-3)
A 		30
C 124.1
(3)
A 		78.3
(0.1)
A 		33.5
(-2.8)
A 		30.9
(-3)
A 		52.5
(-1.6)
A 		32.1
(-2.9)
A 		93
avr 73.6
(2.2) 		79.9
(3) 		33.3
(-3) 		39.7
(-2.2) 		51.9
(-0.6) 		34.6
(-2.8) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183465_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18190
Sequence Type Exemplar sequence
Representative Public ID M02F4.3 NCBI
Target Description M02F4.3 /REP_DB=WormBase Gene ID /WP=CE04764 /TR=Q21469 /GB=AAA83201.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076119(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076119 NCBI Caenorhabditis elegans M02F4.3 (M02F4.3) mRNA, complete cds. 11/11 None
SNAP00000027801 ENSEMBL cdna:SNAP chromosome:CEL140:X:3036917:3039007:-1 11/11 None
M02F4.3 ENSEMBL cdna:known chromosome:CEL140:X:3036424:3040723:-1 gene:M02F4.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3036916-3039007(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M02F4.3
Entrez Gene 3565350 Entrez gene
SwissProt Q21469 EMBL-EBI
WormBase CE04764 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83201 Hypothetical protein M02F4.3 [Caenorhabditis elegans] ref|NP_508520.1| M02F4.3 [Caenorhabditis elegans] 1.0E-135
blast CAE68366 Hypothetical protein CBG14120 [Caenorhabditis briggsae] 1.0E-113
blast NP_503052 C52D10.12 [Caenorhabditis elegans] gb|AAK77203.1| Hypothetical protein C52D10.12 [Caenorhabditis elegans] 1.0E-18
Sequence
Target Sequence 
>C. ELEGANS:183465_AT
gagaccactcagttctcatgtctgaaagaagtcggcgtcgttcagcctaagccggccgtg
ctcttcacaaaaggagagttcagcaacaagttcatcatgattttgagtgggcgcgctgtt
gtgacaattggaaaagaggaaatgaggctcgaggcgggcgcgtggcatagttttggaacg
gaggtcctcgatgcaatggctgaagcaatcgagagatctctgaatcagtcaacaagtcgt
tcgactgtttctcttaatactgaaattacgaacaattcaatcggtttcattccggacttc
gataccgtcatcctttacgaatgtgttttctgtgaaatcactgctgcagatctcctcctc
gcctacaattcttctcagataatgcaaaataacacaaagatgcaagttgtccgctccaac
tctagaattagcttgatcgaagaaattccaaaggatgctgtatccactccaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGACCACTCAGTTCTCATGTCTGA 153 395 175 Antisense
AAAGAAGTCGGCGTCGTTCAGCCTA 581 123 199 Antisense
CATGATTTTGAGTGGGCGCGCTGTT 376 205 270 Antisense
GAGGTCCTCGATGCAATGGCTGAAG 52 403 355 Antisense
GTCGTTCGACTGTTTCTCTTAATAC 597 473 410 Antisense
CAATCGGTTTCATTCCGGACTTCGA 614 179 452 Antisense
TCGATACCGTCATCCTTTACGAATG 666 577 473 Antisense
GAAATCACTGCTGCAGATCTCCTCC 389 363 508 Antisense
CTCGCCTACAATTCTTCTCAGATAA 42 235 532 Antisense
TTGTCCGCTCCAACTCTAGAATTAG 321 707 581 Antisense
AAAGGATGCTGTATCCACTCCAATC 321 121 624 Antisense
Sequence Source Affymetrix Proprietary Database