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[183464_at]

Description F13B12.3 /REP_DB=WormBase Gene ID /WP=CE05601 /TR=Q19377 /GB=CAA94592.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 16      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 20.3
(-1)
A 		34.7
(2.4)
A 		37.2
(3)
A 		11.6
(-3)
A 		26
B 24.5
(-3)
A 		32.9
(-2.1)
A 		38.7
(-1.5)
A 		83
(3)
A 		59
C 7.2
(-2.6)
A 		3.2
(-3)
A 		16.7
(-1.8)
A 		70.7
(3)
A 		68
avr 17.3
(-3) 		23.6
(-2) 		30.9
(-0.8) 		55.1
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 11.3
(-3)
A 		14
(-2.8)
A 		32.3
(-1.7)
A 		106.2
(3)
P 		69.1
(0.7)
A 		57
(-0.1)
A 		95
B 40.7
(-0.8)
A 		11.4
(-3)
A 		19.5
(-2.4)
A 		90.8
(3)
P 		75.1
(1.8)
P 		30.4
(-1.6)
A 		79
C 8.8
(-2.6)
A 		1.3
(-3)
A 		28.3
(-1.7)
A 		129.2
(3)
P 		69.8
(0.2)
A 		60.9
(-0.2)
M 		128
avr 20.3
(-2.3) 		8.9
(-3) 		26.7
(-1.9) 		108.7
(3) 		71.3
(0.8) 		49.4
(-0.6) 		100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 7.4
(1.3)
A 		7.5
(1.4)
A 		9.7
(3)
A 		1.7
(-3)
A 		8
B 7.8
(-3)
A 		8.1
(-2.8)
A 		9
(-2.3)
A 		17.7
(3)
A 		10
C 2.4
(-2.2)
A 		0.9
(-3)
A 		5.8
(-0.3)
A 		11.9
(3)
A 		11
avr 5.9
(-2.5) 		5.5
(-3) 		8.2
(0.3) 		10.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 2.1
(-3)
A 		5
(-2.3)
A 		7
(-1.8)
A 		26.9
(3)
P 		20.8
(1.5)
A 		13.9
(-0.1)
A 		25
B 14.2
(-0.7)
A 		3.8
(-3)
A 		4.7
(-2.8)
A 		24
(1.5)
P 		30.5
(3)
P 		11.3
(-1.3)
A 		27
C 3.2
(-2.3)
A 		0.4
(-3)
A 		7.2
(-1.4)
A 		26
(3)
P 		22.6
(2.2)
A 		20.4
(1.7)
M 		26
avr 6.5
(-2.1) 		3.1
(-3) 		6.3
(-2.1) 		25.6
(3) 		24.6
(2.7) 		15.2
(0.2) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183464_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9127
Sequence Type Exemplar sequence
Representative Public ID F13B12.3 NCBI
Target Description F13B12.3 /REP_DB=WormBase Gene ID /WP=CE05601 /TR=Q19377 /GB=CAA94592.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027960
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000009879 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10444111:10444556:1 None
F13B12.7 ENSEMBL cdna:known chromosome:CEL140:IV:10444066:10444556:1 gene:F13B12.7 None
NM_001027960 NCBI Caenorhabditis elegans F13B12.7 (F13B12.7) mRNA, complete cds. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069526 5/11 Cross Hyb Matching Probes None
GENEFINDER00000009884 5/11 Cross Hyb Matching Probes None
F13B12.3 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10439186-10444562(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13B12.7
Entrez Gene 3565678 Entrez gene
SwissProt Q7JLR2 EMBL-EBI
WormBase CE35468 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE46666 Hypothetical protein F13B12.7 [Caenorhabditis elegans] ref|NP_001023131.1| F13B12.7 [Caenorhabditis elegans] 2.0E-75
blast CAE46666 Hypothetical protein F13B12.7 [Caenorhabditis elegans] ref|NP_001023131.1| F13B12.7 [Caenorhabditis elegans] 2.0E-66
blast CAE63819 Hypothetical protein CBG08369 [Caenorhabditis briggsae] 3.0E-22
blast CAE63819 Hypothetical protein CBG08369 [Caenorhabditis briggsae] 7.0E-22
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023131.1 1 110-132
F13B12.7 1 110-132
SNAP00000009879 1 95-117
Sequence
Target Sequence 
>C. ELEGANS:183464_AT
aaattatggattcctgcaccactctcgttgctcttttacattctcaaaactttttgcttt
tttctatcaaaaattccaatcattggagttatacccaattactttatgaaaattttacac
attttcgaagggaaagtatatgcaaaagaaaggaggaaaaatcgaaaatatgaagcagta
atgaatggattaatatctaacccgaatcgatgggatggtcctacagaagatgagaaaaag
tcagtggaattagtcagagagcaaatgagcattttgaacgaagtttgcaacaaaactgaa
atatttcaattttcgatcggaaataaagttgtcagctgtcctctttacgatgggttggct
tttcttgacaataattcaacacatattgtgcaatgtccaacatattgtgaagtttgcaag
aaaatgttcatttgttcgaaaagatcattgacaggaatcatctacacaccggatggtcgc
aaaaaagattcaattgattttcaatatggttttcttgatcaacctgttgttcgcggcgtc
gactggtcaatttttgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATTATGGATTCCTGCACCACTCT 164 117 1420 Antisense
TCTCGTTGCTCTTTTACATTCTCAA 454 611 1442 Antisense
GGAGTTATACCCAATTACTTTATGA 509 515 1504 Antisense
GAATGGATTAATATCTAACCCGAAT 632 331 1602 Antisense
ACCCGAATCGATGGGATGGTCCTAC 419 89 1619 Antisense
TCAGCTGTCCTCTTTACGATGGGTT 429 625 1751 Antisense
TACGATGGGTTGGCTTTTCTTGACA 161 649 1765 Antisense
TGACAGGAATCATCTACACACCGGA 199 571 1868 Antisense
ATCTACACACCGGATGGTCGCAAAA 212 33 1879 Antisense
CTTGATCAACCTGTTGTTCGCGGCG 648 215 1933 Antisense
CGGCGTCGACTGGTCAATTTTTGTT 104 243 1953 Antisense
Sequence Source Affymetrix Proprietary Database