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[183463_at]

Description Y39B6B.O /REP_DB=WormBase Gene ID /WP=CE21690 /TR=Q9NEU5 /GB=CAB60920.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 04      6grp_total > 46      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 387
1 2 3 4 range
A 232.2
(-1.2)
P 		139.3
(-3)
M 		140.9
(-3)
A 		441.3
(3)
P 		302
B 228.4
(-0.8)
P 		87.4
(-3)
A 		132.1
(-2.3)
P 		474.5
(3)
P 		387
C 260.1
(-0.1)
P 		88
(-3)
P 		165.4
(-1.7)
P 		447.4
(3)
P 		359
avr 240.2
(-0.7) 		104.9
(-3) 		146.1
(-2.3) 		454.4
(3) 		350

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 95.5
(2.4)
A 		102
(3)
P 		64
(-0.7)
M 		44.4
(-2.6)
A 		40.6
(-3)
A 		66.6
(-0.5)
A 		61
B 120.6
(2.5)
P 		100.2
(1.6)
P 		80.8
(0.7)
A 		69
(0.1)
A 		3.1
(-3)
A 		130.5
(3)
P 		127
C 127.6
(3)
P 		95.1
(1.3)
P 		72.7
(0.1)
A 		44.8
(-1.4)
A 		15.8
(-3)
A 		112.7
(2.2)
P 		112
avr 114.6
(3) 		99.1
(2) 		72.5
(0.3) 		52.7
(-0.9) 		19.8
(-3) 		103.3
(2.3) 		95
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 84.5
(3)
P 		30.2
(-3)
M 		36.8
(-2.3)
A 		64.6
(0.8)
P 		54
B 72.8
(0.9)
P 		21.6
(-3)
A 		30.6
(-2.3)
P 		101.1
(3)
P 		80
C 86.1
(3)
P 		25.3
(-3)
P 		57.7
(0.2)
P 		75.4
(1.9)
P 		61
avr 81.1
(3) 		25.7
(-3) 		41.7
(-1.3) 		80.4
(2.9) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 17.6
(-1.5)
A 		36.3
(3)
P 		13.9
(-2.4)
M 		11.2
(-3)
A 		12.2
(-2.8)
A 		16.2
(-1.8)
A 		25
B 42
(2.2)
P 		33.4
(1.1)
P 		19.6
(-0.7)
A 		18.3
(-0.8)
A 		1.3
(-3)
A 		48.7
(3)
P 		47
C 47.3
(3)
P 		29
(0.4)
P 		18.5
(-1.1)
A 		9
(-2.4)
A 		5.1
(-3)
A 		37.7
(1.6)
P 		42
avr 35.6
(3) 		32.9
(2.4) 		17.3
(-0.7) 		12.8
(-1.7) 		6.2
(-3) 		34.2
(2.7) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183463_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19437
Sequence Type Exemplar sequence
Representative Public ID Y39B6B.O NCBI
Target Description Y39B6B.O /REP_DB=WormBase Gene ID /WP=CE21690 /TR=Q9NEU5 /GB=CAB60920.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171574(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171574 NCBI Caenorhabditis elegans Y39B6A.33 (Y39B6A.33) mRNA, complete cds. 11/11 None
SNAP00000030532 ENSEMBL cdna:SNAP chromosome:CEL140:V:19004529:19011305:1 11/11 None
GENEFINDER00000030699 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19004529:19010336:1 11/11 None
Y39B6A.33.2 ENSEMBL cdna:known chromosome:CEL140:V:19004528:19009243:1 gene:Y39B6A.33 11/11 None
Y39B6A.33.1 ENSEMBL cdna:known chromosome:CEL140:V:19004529:19009284:1 gene:Y39B6A.33 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19004528-19008767(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39B6A.33
Entrez Gene 180246 Entrez gene
SwissProt Q9NEU5 EMBL-EBI
WormBase CE21690 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:16681_S_AT expressed protein at
ATH1-121501:263802_AT expressed protein at
CANINE:1602905_AT similar to Glioma tumor suppressor candidate region gene 2 protein (p60) cfa
CANINE_2:CFA.16765.1.S1_AT similar to Glioma tumor suppressor candidate region gene 2 protein (p60) cfa
CANINE_2:CFAAFFX.7037.1.S1_AT similar to Glioma tumor suppressor candidate region gene 2 protein (p60) cfa
CANINE_2:CFAAFFX.7037.1.S1_S_AT similar to Glioma tumor suppressor candidate region gene 2 protein (p60) cfa
DROSOPHILA_2:1629950_AT dm
DROSGENOME1:152691_AT dm
HG-U133A:217807_S_AT glioma tumor suppressor candidate region gene 2 hs
HG-U133_PLUS_2:217807_S_AT glioma tumor suppressor candidate region gene 2 hs
HG-FOCUS:217807_S_AT glioma tumor suppressor candidate region gene 2 hs
HG-U133A_2:217807_S_AT glioma tumor suppressor candidate region gene 2 hs
HG-U133_PLUS_2:234918_AT glioma tumor suppressor candidate region gene 2 hs
HG-U133B:234918_AT glioma tumor suppressor candidate region gene 2 hs
HG-U133_PLUS_2:234339_S_AT glioma tumor suppressor candidate region gene 2 hs
HG-U133B:234339_S_AT glioma tumor suppressor candidate region gene 2 hs
HU35KSUBA:RC_AA448863_AT glioma tumor suppressor candidate region gene 2 hs
HU35KSUBA:HUM_ALU_AT glioma tumor suppressor candidate region gene 2 hs
HU35KSUBB:HUM_ALU_AT glioma tumor suppressor candidate region gene 2 hs
HU35KSUBC:HUM_ALU_AT glioma tumor suppressor candidate region gene 2 hs
HU35KSUBD:HUM_ALU_AT glioma tumor suppressor candidate region gene 2 hs
HUGENEFL:HUM_ALU_AT glioma tumor suppressor candidate region gene 2 hs
HC-G110:HUM_ALU_AT glioma tumor suppressor candidate region gene 2 hs
U133_X3P:G7657129_3P_S_AT glioma tumor suppressor candidate region gene 2 hs
U133_X3P:HS.2237.2.A1_3P_AT glioma tumor suppressor candidate region gene 2 hs
U133_X3P:HS.2237.1.A1_3P_S_AT glioma tumor suppressor candidate region gene 2 hs
HG-U95C:61109_AT glioma tumor suppressor candidate region gene 2 hs
HG-U95C:65771_S_AT glioma tumor suppressor candidate region gene 2 hs
HG-U95C:65772_R_AT glioma tumor suppressor candidate region gene 2 hs
HG-U95E:76045_AT glioma tumor suppressor candidate region gene 2 hs
MU11KSUBA:AA511120_G_AT glioma tumor suppressor candidate region gene 2 mm
MG-U74AV2:94022_AT glioma tumor suppressor candidate region gene 2 mm
MOE430A:1423803_S_AT glioma tumor suppressor candidate region gene 2 mm
MOUSE430A_2:1423803_S_AT glioma tumor suppressor candidate region gene 2 mm
MOUSE430_2:1423803_S_AT glioma tumor suppressor candidate region gene 2 mm
MOE430A:1452409_AT glioma tumor suppressor candidate region gene 2 mm
MOUSE430A_2:1452409_AT glioma tumor suppressor candidate region gene 2 mm
MOUSE430_2:1452409_AT glioma tumor suppressor candidate region gene 2 mm
MOE430A:1451121_A_AT glioma tumor suppressor candidate region gene 2 mm
MOUSE430A_2:1451121_A_AT glioma tumor suppressor candidate region gene 2 mm
MOUSE430_2:1451121_A_AT glioma tumor suppressor candidate region gene 2 mm
MU11KSUBA:AA511120_AT Glioma tumor suppressor candidate region gene 2 (Gltscr2), mRNA mm
RG-U34B:RC_AI012174_AT glioma tumor suppressor candidate region gene 2 rn
RG-U34C:AA012708_F_AT glioma tumor suppressor candidate region gene 2 rn
RAE230A:1371471_AT glioma tumor suppressor candidate region gene 2 rn
RAT230_2:1371471_AT glioma tumor suppressor candidate region gene 2 rn
YEAST_2:1775962_AT Nucleolar protein; involved in biogenesis of the 60S subunit of the ribosome; interacts with rRNA processing factors Cbf5p and Nop2p; null mutant is viable but growth is severely impaired Sc
Protein Similarities
Method ID Description E-Value
blast CAC51048 Hypothetical protein Y39B6A.33 [Caenorhabditis elegans] ref|NP_741664.1| Y39B6A.33 [Caenorhabditis elegans] sp|Q9NEU5|GSCR2_CAEEL Hypothetical protein Y39B6A.33 in chromosome V 0.0
blast CAE56188 Hypothetical protein CBG23810 [Caenorhabditis briggsae] 1.0E-143
blast CAE56188 Hypothetical protein CBG23810 [Caenorhabditis briggsae] 1.0E-142
Sequence
Target Sequence 
>C. ELEGANS:183463_AT
ccacagagcacgagcgcttcttggaaatggctgaaggactcagaattcatccgaaatacg
gaaaagacgatgaagaagaagaagaagctggaaattctgaaaaatcgatgaaaactggtg
gagaagcggagccaaagagccaacgtgtcgaatgtgaccgtatgacaaaagagcaaaaga
aaaagaaggcaaaagcacagaaattggataaagaagagaagcgtcggcttgaggaaaagg
ccaaggagcaggattcacataatgtctatcgcacaaaacaactgcacaaagagcttgacg
aagaggaaaagcagcgtcacgaggagtcggaagtccgtaaaaaggaaaaattgataaata
aactgacaaaacgtcagcaactcggaaaaggaaaattcgttgacgccgaagatccattcc
ttcttcaggaagaactaactggaaaccttcgtcaattgaagccacagggacacgtgttgg
at

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCACAGAGCACGAGCGCTTCTTGGA 454 275 704 Antisense
GAAGGACTCAGAATTCATCCGAAAT 2 335 736 Antisense
GAGCCAAAGAGCCAACGTGTCGAAT 396 385 832 Antisense
GAAGCGTCGGCTTGAGGAAAAGGCC 6 343 921 Antisense
AGGAGCAGGATTCACATAATGTCTA 610 55 947 Antisense
GTCTATCGCACAAAACAACTGCACA 125 469 967 Antisense
GCGTCACGAGGAGTCGGAAGTCCGT 542 291 1017 Antisense
GACAAAACGTCAGCAACTCGGAAAA 702 363 1068 Antisense
TTCGTTGACGCCGAAGATCCATTCC 73 695 1099 Antisense
GAACTAACTGGAAACCTTCGTCAAT 234 349 1135 Antisense
GAAGCCACAGGGACACGTGTTGGAT 710 343 1161 Antisense
Sequence Source Affymetrix Proprietary Database