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[183459_at]

Description C16C4.2 /REP_DB=WormBase Gene ID /WP=CE08198 /TR=O16563 /GB=AAB93649.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 37.7
(-3)
A 		41.3
(-2.6)
A 		42.8
(-2.5)
A 		97.4
(3)
P 		60
B 37.8
(-0.9)
A 		1.3
(-3)
A 		16.1
(-2.2)
A 		105.9
(3)
P 		105
C 35.2
(-2.3)
A 		33.8
(-2.4)
A 		20.2
(-3)
A 		155.8
(3)
P 		136
avr 36.9
(-2.3) 		25.5
(-3) 		26.4
(-2.9) 		119.7
(3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 4
(-3)
A 		37.6
(0)
A 		70.9
(3)
P 		23.4
(-1.3)
A 		5
(-2.9)
A 		29.3
(-0.7)
A 		67
B 20.1
(-3)
A 		42.6
(1.8)
A 		43.3
(2)
A 		44.2
(2.1)
A 		48.2
(3)
M 		43
(1.9)
A 		28
C 16.9
(-2.4)
A 		52.2
(3)
A 		36.3
(0.6)
A 		24.6
(-1.2)
A 		12.9
(-3)
A 		20.4
(-1.9)
A 		39
avr 13.7
(-3) 		44.1
(2) 		50.2
(3) 		30.7
(-0.2) 		22
(-1.6) 		30.9
(-0.2) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 13.7
(2.3)
A 		9
(-3)
A 		11.2
(-0.5)
A 		14.3
(3)
P 		5
B 12.1
(0.2)
A 		0.3
(-3)
A 		3.7
(-2.1)
A 		22.6
(3)
P 		22
C 11.7
(-1.5)
A 		9.7
(-2.2)
A 		7
(-3)
A 		26.3
(3)
P 		19
avr 12.5
(-0.5) 		6.3
(-3) 		7.3
(-2.6) 		21.1
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 0.7
(-3)
A 		13.4
(2.2)
A 		15.4
(3)
P 		5.9
(-0.9)
A 		1.5
(-2.7)
A 		7.1
(-0.4)
A 		15
B 7
(-3)
A 		14.2
(0.4)
A 		10.5
(-1.3)
A 		11.7
(-0.8)
A 		19.6
(3)
M 		16
(1.3)
A 		13
C 6.3
(-1.9)
A 		15.9
(3)
A 		9.2
(-0.4)
A 		4.9
(-2.6)
A 		4.2
(-3)
A 		6.8
(-1.7)
A 		12
avr 4.7
(-3) 		14.5
(3) 		11.7
(1.3) 		7.5
(-1.3) 		8.4
(-0.7) 		10
(0.2) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183459_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5145
Sequence Type Exemplar sequence
Representative Public ID C16C4.2 NCBI
Target Description C16C4.2 /REP_DB=WormBase Gene ID /WP=CE08198 /TR=O16563 /GB=AAB93649.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061712
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061712 NCBI Caenorhabditis elegans C16C4.2 (C16C4.2) mRNA, complete cds. None
C16C4.2 ENSEMBL cdna:known chromosome:CEL140:II:1891138:1892508:1 gene:C16C4.2 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026908 4/11 Cross Hyb Matching Probes None
GENEFINDER00000026920 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1891136-1892507(+) 99.66 100.0
Public Domain and Genome References
Gene Title
Ensembl C16C4.2
Entrez Gene 182656 Entrez gene
SwissProt O16563 EMBL-EBI
WormBase CE32309 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB93649 Hypothetical protein C16C4.2 [Caenorhabditis elegans] ref|NP_494113.2| C16C4.2 [Caenorhabditis elegans] 1.0E-158
blast AAB93651 Hypothetical protein C16C4.5 [Caenorhabditis elegans] ref|NP_494101.1| C16C4.5 [Caenorhabditis elegans] 3.0E-61
blast AAB93657 Hypothetical protein C16C4.12 [Caenorhabditis elegans] ref|NP_494110.1| C16C4.12 [Caenorhabditis elegans] 3.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 4.6E-53
Sequence
Target Sequence 
>C. ELEGANS:183459_AT
cagagcttaacttccaatgattcatacactttcaacgggccaaaaggtcgcggccgggat
aaacttataagatgggatgatatgctagagaagtatatggtgaacgacagtattataatt
gaagcacgtgttaagataattaaaatgactggatgtgaagaggaaaaaagtatcgatgat
ttggaagatgacttctctgattatcacaacgaatatttcaaagttaaccaactttatttc
aaatcaaatatcaataatgcacaatcaaatctgttttcaatagtcaaatgccatttccat
ccacttttccagggaatattcttcaattccaaacgttttgatggtcttcacatgagcttt
gtcgttgactatgtacttttcttctataagatcgaaaatccaattggctatggttttggc
gtcaaaatatggatcgaatcatgtttgagagttaattgtactgcaaattatttaaaatac
aatttttttgacggaaatttcgaaattttcaagacttttttctacgacaaatattggaat
ttctggaaaaatttcaaatttatcagcaaactcacctctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGAGCTTAACTTCCAATGATTCAT 644 203 283 Antisense
TGATTCATACACTTTCAACGGGCCA 207 565 300 Antisense
TCAACGGGCCAAAAGGTCGCGGCCG 501 613 314 Antisense
GTCGCGGCCGGGATAAACTTATAAG 345 175 329 Antisense
AGATGACTTCTCTGATTATCACAAC 231 67 468 Antisense
AGTCAAATGCCATTTCCATCCACTT 648 61 564 Antisense
ATTTCCATCCACTTTTCCAGGGAAT 18 17 575 Antisense
GATGGTCTTCACATGAGCTTTGTCG 36 409 622 Antisense
GTCGTTGACTATGTACTTTTCTTCT 502 473 643 Antisense
AATTGGCTATGGTTTTGGCGTCAAA 232 179 684 Antisense
AAATTTATCAGCAAACTCACCTCTT 100 117 838 Antisense
Sequence Source Affymetrix Proprietary Database