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[183458_at]

Description F58F9.3 /REP_DB=WormBase Gene ID /WP=CE07300 /TR=Q20989 /GB=AAC48084.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      4grp_highest_8_8 > 12      4grp_high_8_8 > 31      6grp_highest_nonorm > 81      6grp_total > 61      4grp_total > 32      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 140.2
(-3)
P 		155.6
(-1.4)
P 		199.3
(3)
P 		182.7
(1.3)
P 		59
B 148.4
(-3)
P 		179.7
(-0.4)
P 		189.8
(0.4)
P 		220.5
(3)
P 		72
C 122.6
(-3)
P 		192.4
(0)
P 		262.2
(3)
P 		230.3
(1.6)
P 		140
avr 137.1
(-3) 		175.9
(-0.1) 		217.1
(3) 		211.2
(2.6) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 260
1 2 3 4 5 6 range
A 147.1
(-3)
P 		223.8
(-1.1)
P 		369.3
(2.5)
P 		388.1
(3)
P 		238.4
(-0.7)
P 		177.6
(-2.2)
P 		241
B 199.6
(-3)
P 		275.2
(-0.8)
P 		405.7
(3)
P 		289.7
(-0.4)
P 		277.3
(-0.7)
P 		241
(-1.8)
P 		206
C 216.9
(-2.2)
P 		308.2
(0.3)
P 		282.5
(-0.4)
P 		407.5
(3)
P 		188.8
(-3)
P 		248.3
(-1.4)
P 		219
avr 187.9
(-3) 		269.1
(-0.2) 		352.5
(2.7) 		361.8
(3) 		234.8
(-1.4) 		222.3
(-1.8) 		174
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 51.1
(2.8)
P 		33.8
(-1.3)
P 		52.1
(3)
P 		26.7
(-3)
P 		25
B 47.3
(3)
P 		44.4
(-2.3)
P 		44
(-3)
P 		47
(2.5)
P 		3
C 40.6
(-2.8)
P 		55.3
(-1.1)
P 		91.4
(3)
P 		38.8
(-3)
P 		53
avr 46.3
(-0.9) 		44.5
(-1.3) 		62.5
(3) 		37.5
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 27.1
(-3)
P 		79.6
(1.4)
P 		80.4
(1.5)
P 		98.4
(3)
P 		71.9
(0.8)
P 		43.3
(-1.6)
P 		71
B 69.5
(-3)
P 		91.6
(0.1)
P 		98.5
(1)
P 		76.7
(-2)
P 		112.7
(3)
P 		89.9
(-0.2)
P 		43
C 80.4
(0.5)
P 		94
(3)
P 		71.9
(-1)
P 		82
(0.8)
P 		61.1
(-3)
P 		83.1
(1)
P 		33
avr 59
(-3) 		88.4
(3) 		83.6
(2) 		85.7
(2.4) 		81.9
(1.7) 		72.1
(-0.3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183458_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11247
Sequence Type Exemplar sequence
Representative Public ID F58F9.3 NCBI
Target Description F58F9.3 /REP_DB=WormBase Gene ID /WP=CE07300 /TR=Q20989 /GB=AAC48084.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028071(11), NM_001028070(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028071 NCBI Caenorhabditis elegans F58F9.3b (F58F9.3) mRNA, complete cds. 11/11 None
NM_001028070 NCBI Caenorhabditis elegans F58F9.3a (F58F9.3) mRNA, complete cds. 11/11 None
F58F9.3b ENSEMBL cdna:known chromosome:CEL140:IV:6233237:6235591:1 gene:F58F9.3 11/11 None
F58F9.3a ENSEMBL cdna:known chromosome:CEL140:IV:6233237:6233954:1 gene:F58F9.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041824 6/11 Cross Hyb Matching Probes None
GENEFINDER00000041839 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6233242-6233960(+) 100.0 100.0
Public Domain and Genome References
Ensembl F58F9.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48083 Hypothetical protein F58F9.3b [Caenorhabditis elegans] ref|NP_001023242.1| F58F9.3b [Caenorhabditis elegans] 0.0
blast AAC48084 Hypothetical protein F58F9.3a [Caenorhabditis elegans] ref|NP_001023241.1| F58F9.3a [Caenorhabditis elegans] 1.0E-96
blast AAC48083 Hypothetical protein F58F9.3b [Caenorhabditis elegans] ref|NP_001023242.1| F58F9.3b [Caenorhabditis elegans] 7.0E-96
blast AAC48084 Hypothetical protein F58F9.3a [Caenorhabditis elegans] ref|NP_001023241.1| F58F9.3a [Caenorhabditis elegans] 2.0E-95
blast AAC48085 Hypothetical protein F58F9.4 [Caenorhabditis elegans] ref|NP_500939.1| F58F9.4 [Caenorhabditis elegans] 5.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR004987 EMBL-EBI Protein of unknown function DUF272 6.8E-84
Sequence
Target Sequence 
>C. ELEGANS:183458_AT
atggctcaaataatcgacttcttcgcggcatttagaggatactattcggatggttcaaca
tttatccagattattagccttggttcccatcacaatctgtcagtccatatttcggaaaga
atgctttcagagagtggaattaaacttggaaattttctcagtgctacagtttcattggca
gagcatccaaagaatttccaattaaagagactcaacctgcaagtcactgtgcacggaatt
gaggcaaacttggagaagaatgctgatggaattttagtattctctacaaacaactttgca
tcagcgaaggctacgaaccagggtctggagattggaagatacaaaataactgtacaggct
gtgaaaccatctgaaaaagatttgttcaatggtatgaagttttttggaaccgtggaagag
aaaatcagtggtcttacaagacgagttgcctctaacaacacgaacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCTCAAATAATCGACTTCTTCG 459 53 13 Antisense
TCGACTTCTTCGCGGCATTTAGAGG 35 601 26 Antisense
GAGGATACTATTCGGATGGTTCAAC 519 401 47 Antisense
GATTATTAGCCTTGGTTCCCATCAC 573 429 81 Antisense
TCCCATCACAATCTGTCAGTCCATA 220 599 97 Antisense
ATTTTCTCAGTGCTACAGTTTCATT 371 15 164 Antisense
TCAACCTGCAAGTCACTGTGCACGG 277 631 224 Antisense
ACAACTTTGCATCAGCGAAGGCTAC 534 111 302 Antisense
GAAGGCTACGAACCAGGGTCTGGAG 478 333 318 Antisense
GGTCTTACAAGACGAGTTGCCTCTA 585 501 442 Antisense
GAGTTGCCTCTAACAACACGAACCA 538 397 455 Antisense
Sequence Source Affymetrix Proprietary Database