[Home] | [Total List]

[183457_s_at]

Description Y39B6B.W /REP_DB=WormBase Gene ID /WP=CE21698 /TR=Q9NET7 /GB=CAB60928.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 18      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 5.8
(-0.7)
A 		5.4
(-1)
A 		2.6
(-3)
A 		10.9
(3)
A 		8
B 1.3
(-3)
A 		3.7
(-1.5)
A 		10.6
(3)
A 		5.2
(-0.5)
A 		9
C 11
(-2.2)
A 		22
(-0.8)
A 		4.4
(-3)
A 		51.9
(3)
A 		48
avr 6
(-3) 		10.4
(-1.4) 		5.9
(-3) 		22.7
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 305
1 2 3 4 5 6 range
A 2
(-3)
A 		1.6
(-3)
A 		2.8
(-3)
A 		12
(-2.7)
A 		142.1
(1.5)
A 		190
(3)
A 		188
B 1.3
(-3)
A 		1.7
(-3)
A 		1.4
(-3)
A 		5.1
(-2.9)
A 		183.7
(0.6)
P 		306.4
(3)
P 		305
C 2.8
(-3)
A 		5.6
(-2.9)
A 		9.8
(-2.9)
A 		12.9
(-2.8)
A 		140.1
(-0.2)
A 		298.7
(3)
P 		296
avr 2
(-3) 		3
(-3) 		4.7
(-2.9) 		10
(-2.8) 		155.3
(0.5) 		265
(3) 		263
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2.1
(3)
A 		1.2
(-0.9)
A 		0.7
(-3)
A 		1.6
(0.9)
A 		1
B 0.4
(-3)
A 		0.9
(-1.6)
A 		2.5
(3)
A 		1.1
(-1)
A 		2
C 3.6
(-1.3)
A 		6.3
(0.9)
A 		1.5
(-3)
A 		8.8
(3)
A 		7
avr 2
(-1.9) 		2.8
(0.3) 		1.6
(-3) 		3.8
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		3.1
(-2.6)
A 		42.9
(2.6)
A 		46.3
(3)
A 		46
B 0.5
(-3)
A 		0.6
(-3)
A 		0.3
(-3)
A 		1.4
(-2.9)
A 		74.6
(0.9)
P 		114.3
(3)
P 		114
C 1
(-3)
A 		1.7
(-3)
A 		2.5
(-2.9)
A 		2.6
(-2.9)
A 		45.3
(-0.3)
A 		100
(3)
P 		99
avr 0.6
(-3) 		1
(-3) 		1.1
(-3) 		2.4
(-2.9) 		54.3
(0.7) 		86.9
(3) 		86
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183457_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19434
Sequence Type Exemplar sequence
Representative Public ID Y39B6B.W NCBI
Target Description Y39B6B.W /REP_DB=WormBase Gene ID /WP=CE21698 /TR=Q9NET7 /GB=CAB60928.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171598(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171598 NCBI Caenorhabditis elegans Y39B6A.10 (Y39B6A.10) mRNA, complete cds. 11/11 None
GENEFINDER00000030721 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19134185:19136147:-1 11/11 None
Y39B6A.10 ENSEMBL cdna:known chromosome:CEL140:V:19134171:19136147:-1 gene:Y39B6A.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19134184-19136147(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39B6A.10
Entrez Gene 180258 Entrez gene
SwissProt Q9NET7 EMBL-EBI
WormBase CE21698 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC51067 Hypothetical protein Y39B6A.10 [Caenorhabditis elegans] ref|NP_741688.1| Y39B6A.10 [Caenorhabditis elegans] 1.0E-131
blast CAB07309 B0413.5 [Caenorhabditis elegans] 2.0E-86
blast CAE73148 Hypothetical protein CBG20539 [Caenorhabditis briggsae] 2.0E-27
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741688.1 1 33-55
Y39B6A.10 1 33-55
GENEFINDER00000030721 1 33-55
Sequence
Target Sequence 
>C. ELEGANS:183457_S_AT
cgatttttccgattggtctgttctttggcgtctatactgcaattcaatcgattttcgggt
ggaaaaaccggaaaattggcgaaaaaatcgataaaagcgaggattccgggatttccgatg
cttctgaggcttctgatgatgaatctcaacaaatttcgacgaatttcgagtttcagtcaa
tttccggcaagttgaagcagctgaaaatcactgaaaacctggaaaaatcgataatcgact
acttggcactgtgccagaaactgccggtgctcgtcacgttgcgtgacgtcacggaatttc
aaattttcgcccaaaaatcggaggtcccgctgcgaattcagtacaagaagcgaaaattga
aaattttgagaatctcggaaaatttgaagcaattcttcacgaaaatgctcggcaactcga
cgtccggcactcatttgatctacttttttggcgccaaatcgaaaatttacgagaatttcg
aaaatttgactgaaaatcgacgattttgcgcggaaatcaaggaaatttacgctgaaaacg
gagaaaatcgaggaattttggaaaaatcggccgaggagattttggtggtcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGATTTTTCCGATTGGTCTGTTCTT 5 249 155 Antisense
GTCTGTTCTTTGGCGTCTATACTGC 459 471 170 Antisense
GGATTCCGGGATTTCCGATGCTTCT 703 507 255 Antisense
GATGCTTCTGAGGCTTCTGATGATG 640 413 271 Antisense
ATTTCGAGTTTCAGTCAATTTCCGG 202 17 317 Antisense
ATCGATAATCGACTACTTGGCACTG 13 35 381 Antisense
GCACTGTGCCAGAAACTGCCGGTGC 671 313 400 Antisense
AAAATCGGAGGTCCCGCTGCGAATT 492 131 468 Antisense
CGAAAATGCTCGGCAACTCGACGTC 485 251 554 Antisense
TCCGGCACTCATTTGATCTACTTTT 235 595 577 Antisense
GGCCGAGGAGATTTTGGTGGTCAAC 263 543 723 Antisense
Sequence Source Affymetrix Proprietary Database