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[183456_at]

Description T09F5.11 /REP_DB=WormBase Gene ID /WP=CE20040 /TR=O18077 /GB=CAA21768.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 33.5
(-3)
A 		101.4
(2.7)
P 		40.1
(-2.4)
A 		104.9
(3)
A 		71
B 93.6
(3)
P 		72.1
(0.8)
P 		41.3
(-2.5)
A 		36.1
(-3)
A 		58
C 48.6
(-3)
A 		79
(0.2)
P 		70.7
(-0.7)
P 		105.8
(3)
A 		57
avr 58.6
(-1.6) 		84.2
(3) 		50.7
(-3) 		82.3
(2.7) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 27.9
(-1.4)
A 		93.8
(3)
P 		65.8
(1.1)
P 		80
(2.1)
A 		57.6
(0.6)
A 		4.8
(-3)
A 		89
B 64.4
(1.2)
P 		72.3
(1.8)
A 		79.2
(2.3)
P 		87.6
(3)
A 		60
(0.8)
M 		11.5
(-3)
A 		76
C 50.9
(0.4)
A 		63.1
(1.3)
A 		74.1
(2.1)
A 		86.6
(3)
A 		47.6
(0.2)
A 		3.2
(-3)
A 		83
avr 47.7
(0.2) 		76.4
(2.4) 		73
(2.1) 		84.7
(3) 		55.1
(0.7) 		6.5
(-3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 12.2
(-2.1)
A 		22
(3)
P 		10.5
(-3)
A 		15.4
(-0.4)
A 		12
B 29.8
(3)
P 		17.8
(-0.3)
P 		9.6
(-2.5)
A 		7.7
(-3)
A 		22
C 16.1
(-3)
A 		22.7
(1.6)
P 		24.7
(3)
P 		17.8
(-1.8)
A 		9
avr 19.4
(1.8) 		20.8
(3) 		14.9
(-1.9) 		13.6
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 5.2
(-2.3)
A 		33.3
(3)
P 		14.3
(-0.6)
P 		20.3
(0.6)
A 		17.4
(0)
A 		1.2
(-3)
A 		32
B 22.4
(2.4)
P 		24.1
(2.9)
A 		19.2
(1.4)
P 		23.2
(2.6)
A 		24.4
(3)
M 		4.3
(-3)
A 		20
C 18.9
(2.9)
A 		19.3
(3)
A 		18.9
(2.9)
A 		17.4
(2.4)
A 		15.4
(1.7)
A 		1.1
(-3)
A 		18
avr 15.5
(0.4) 		25.6
(3) 		17.5
(0.9) 		20.3
(1.6) 		19.1
(1.3) 		2.2
(-3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183456_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13167
Sequence Type Exemplar sequence
Representative Public ID T09F5.11 NCBI
Target Description T09F5.11 /REP_DB=WormBase Gene ID /WP=CE20040 /TR=O18077 /GB=CAA21768.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074345(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074345 NCBI Caenorhabditis elegans T09F5.11 (T09F5.11) mRNA, complete cds. 11/11 None
SNAP00000027053 ENSEMBL cdna:SNAP chromosome:CEL140:V:15185824:15186627:1 11/11 None
T09F5.11 ENSEMBL cdna:known chromosome:CEL140:V:15185026:15186627:1 gene:T09F5.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15185003-15186627(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T09F5.11
Entrez Gene 180026 Entrez gene
SwissProt O18077 EMBL-EBI
WormBase CE28956 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21768 Hypothetical protein T09F5.11 [Caenorhabditis elegans] emb|CAB05812.2| Hypothetical protein T09F5.11 [Caenorhabditis elegans] ref|NP_506746.1| T09F5.11 [Caenorhabditis elegans] 1.0E-164
blast CAA21768 Hypothetical protein T09F5.11 [Caenorhabditis elegans] emb|CAB05812.2| Hypothetical protein T09F5.11 [Caenorhabditis elegans] ref|NP_506746.1| T09F5.11 [Caenorhabditis elegans] 1.0E-114
blast CAB05520 Hypothetical protein F44G3.8 [Caenorhabditis elegans] ref|NP_507061.1| F44G3.8 [Caenorhabditis elegans] 1.0E-35
blast CAB02775 Hypothetical protein C25D7.4 [Caenorhabditis elegans] ref|NP_506704.1| C25D7.4 [Caenorhabditis elegans] 7.0E-33
blast CAB05520 Hypothetical protein F44G3.8 [Caenorhabditis elegans] ref|NP_507061.1| F44G3.8 [Caenorhabditis elegans] 5.0E-25
blast CAD89750 Hypothetical protein T25E12.12 [Caenorhabditis elegans] ref|NP_001024155.1| T25E12.12 [Caenorhabditis elegans] 3.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.6E-52
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.6E-11
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.6E-52
Sequence
Target Sequence 
>C. ELEGANS:183456_AT
gaagcaaaccaccgagagactcttgtaaactcccttccagtagttctaaagtctgcagag
cctctgaatgtcagtgagtttcaagttaaaagagcacgattcgacgagatggtgcctatt
ttggcatgcttcgaggcgggaaaacttaggaaattgagttttctgcaaagcattgaccaa
tatgacttgttcgaaactattgttcatttggatcaatggaaagaggcaaaggttctagaa
gcgttgttctcaacgtatttgatagatgttgaggagctctttcattttgagcattttaag
attaaaactgattcatttaccacggaagatgccatacagaccagagatatcctcacagta
tctgcccacttccagtacgctaaacttttcttcccggaaaaccgatctacggagcttgca
agagtgttcgacccgaaatatgaaggcccgttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCAAACCACCGAGAGACTCTTG 209 339 709 Antisense
GAGAGACTCTTGTAAACTCCCTTCC 566 393 722 Antisense
TGTAAACTCCCTTCCAGTAGTTCTA 151 559 732 Antisense
GTTCTAAAGTCTGCAGAGCCTCTGA 706 443 751 Antisense
TCGACGAGATGGTGCCTATTTTGGC 365 601 809 Antisense
TATTTTGGCATGCTTCGAGGCGGGA 103 661 825 Antisense
GGAAGATGCCATACAGACCAGAGAT 616 531 1032 Antisense
GAGATATCCTCACAGTATCTGCCCA 335 397 1052 Antisense
CACTTCCAGTACGCTAAACTTTTCT 278 1 1075 Antisense
GCTTGCAAGAGTGTTCGACCCGAAA 304 303 1122 Antisense
CGACCCGAAATATGAAGGCCCGTTG 355 205 1137 Antisense
Sequence Source Affymetrix Proprietary Database