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[183455_at]

Description F26B1.1 /REP_DB=WormBase Gene ID /WP=CE09673 /TR=P91279 /GB=AAB37793.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 1.4
(-3)
A 		1.6
(-3)
A 		2.6
(-2.8)
A 		36.3
(3)
A 		35
B 0.7
(-3)
A 		1.6
(1.9)
A 		1.1
(-0.8)
A 		1.8
(3)
A 		1
C 1.2
(-3)
A 		1.9
(-2.9)
A 		1
(-3)
A 		56.3
(3)
M 		55
avr 1.1
(-3) 		1.7
(-2.9) 		1.6
(-2.9) 		31.5
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 177
1 2 3 4 5 6 range
A 2.1
(-3)
A 		1.6
(-3)
A 		2.2
(-3)
A 		15.3
(-2.3)
A 		97.3
(1.6)
P 		125.1
(3)
P 		124
B 2.1
(-3)
A 		1.3
(-3)
A 		2.2
(-3)
A 		2.3
(-3)
A 		140.3
(3)
P 		105.7
(1.5)
P 		139
C 1.1
(-3)
A 		0.9
(-3)
A 		0.5
(-3)
A 		2.2
(-2.9)
A 		90.3
(0)
P 		177.5
(3)
P 		177
avr 1.8
(-3) 		1.3
(-3) 		1.6
(-3) 		6.6
(-2.8) 		109.3
(1.8) 		136.1
(3) 		135
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.5
(-2.8)
A 		0.3
(-3)
A 		0.7
(-2.5)
A 		5.3
(3)
A 		5
B 0.2
(-3)
A 		0.4
(3)
A 		0.3
(-0)
A 		0.4
(3)
A 		0
C 0.4
(-2.9)
A 		0.5
(-2.9)
A 		0.3
(-3)
A 		9.5
(3)
M 		9
avr 0.4
(-3) 		0.4
(-3) 		0.4
(-3) 		5.1
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.6
(-3)
A 		0.5
(-3)
A 		3.9
(-2.3)
A 		29.4
(2.8)
P 		30.5
(3)
P 		30
B 0.7
(-3)
A 		0.4
(-3)
A 		0.5
(-3)
A 		0.6
(-3)
A 		57
(3)
P 		39.4
(1.1)
P 		57
C 0.4
(-3)
A 		0.3
(-3)
A 		0.1
(-3)
A 		0.4
(-3)
A 		29.2
(-0.1)
P 		59.4
(3)
P 		59
avr 0.5
(-3) 		0.4
(-3) 		0.4
(-3) 		1.6
(-2.8) 		38.5
(2.4) 		43.1
(3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183455_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1662
Sequence Type Exemplar sequence
Representative Public ID F26B1.1 NCBI
Target Description F26B1.1 /REP_DB=WormBase Gene ID /WP=CE09673 /TR=P91279 /GB=AAB37793.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059426(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059426 NCBI Caenorhabditis elegans F26B1.1 (F26B1.1) mRNA, complete cds. 11/11 None
F26B1.1 ENSEMBL cdna:known chromosome:CEL140:I:6335010:6338261:1 gene:F26B1.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000041724 2/11 Cross Hyb Matching Probes None
SNAP00000041719 8/11 Cross Hyb Matching Probes None
GENEFINDER00000041725 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6334938-6338190(+) 93.64 100.0
Public Domain and Genome References
Gene Title
Ensembl F26B1.1
Entrez Gene 172332 Entrez gene
SwissProt P91279 EMBL-EBI
WormBase CE30517 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491827 F26B1.1 [Caenorhabditis elegans] gb|AAB37793.2| Hypothetical protein F26B1.1 [Caenorhabditis elegans] 5.0E-77
blast AAN60528 Hypothetical protein C48E7.7 [Caenorhabditis elegans] ref|NP_491801.1| C48E7.7 [Caenorhabditis elegans] 2.0E-24
blast NP_491799 T08B2.12 [Caenorhabditis elegans] gb|AAG00019.1| Hypothetical protein T08B2.12 [Caenorhabditis elegans] 2.0E-24
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491827.2 1 20-42
F26B1.1 1 20-42
Sequence
Target Sequence 
>C. ELEGANS:183455_AT
aaagctgttaaagtcgcaaaggtatataataaaggagtgtgtaatccaacttttcaaatc
aaaagttcggtatggactgcaactgaagtcactgaagatgcaactgaagtcactgaagat
gcaactgtggctcacattgaaacaacagccgaagccgttgcagaagcagaaccagctaca
gaaccagttcaaaccaccgaagctgttgaagaaactacacaagctgttgttgtagaatcc
actcaagagactgtaaatgctgaaaccaatactccagttgatactccagctaccaacaac
gtcgaagcaactactgaagcggcttctcgtccatcgctttcatcgactgttgcatcaaat
atgacttctgctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCTGTTAAAGTCGCAAAGGTAT 580 105 325 Antisense
AGGAGTGTGTAATCCAACTTTTCAA 157 57 357 Antisense
GTTCGGTATGGACTGCAACTGAAGT 419 439 389 Antisense
GATGCAACTGAAGTCACTGAAGATG 250 413 421 Antisense
ATGCAACTGTGGCTCACATTGAAAC 526 43 443 Antisense
ACATTGAAACAACAGCCGAAGCCGT 229 105 458 Antisense
GTAGAATCCACTCAAGAGACTGTAA 449 457 556 Antisense
GAGACTGTAAATGCTGAAACCAATA 17 395 571 Antisense
CAACAACGTCGAAGCAACTACTGAA 473 189 618 Antisense
CTACTGAAGCGGCTTCTCGTCCATC 348 225 635 Antisense
TTGCATCAAATATGACTTCTGCTGA 658 701 674 Antisense
Sequence Source Affymetrix Proprietary Database