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[183454_at]

Description F38B6.1 /REP_DB=WormBase Gene ID /WP=CE04514 /TR=Q20148 /GB=AAA81147.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 43      6grp_total > 0      4grp_total > 49      6grp_total_sub > Hat      6grp_high1_sub > 02      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 188
1 2 3 4 range
A 34.2
(-3)
A 		210.5
(3)
P 		211.9
(3)
P 		114.7
(-0.3)
P 		178
B 27.4
(-2.9)
A 		164.8
(2.4)
P 		181.3
(3)
P 		23.9
(-3)
A 		157
C 26.7
(-3)
A 		187.3
(2.7)
P 		195.6
(3)
P 		81.5
(-1.1)
P 		169
avr 29.4
(-3) 		187.5
(2.7) 		196.3
(3) 		73.4
(-1.4) 		167

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 62.4
(-3)
M 		109.1
(3)
P 		101.3
(2)
P 		70.4
(-2)
A 		76
(-1.3)
P 		86.6
(0.1)
P 		47
B 62.5
(-3)
P 		146
(3)
P 		71
(-2.4)
A 		71.4
(-2.4)
P 		86.3
(-1.3)
P 		74.7
(-2.1)
P 		84
C 52.7
(-3)
P 		94.2
(-1)
P 		79.5
(-1.7)
A 		176.9
(3)
M 		80.4
(-1.7)
P 		101.4
(-0.6)
P 		124
avr 59.2
(-3) 		116.4
(3) 		83.9
(-0.4) 		106.2
(1.9) 		80.9
(-0.7) 		87.6
(-0) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 12.5
(-3)
A 		45.7
(1.6)
P 		55.4
(3)
P 		16.8
(-2.4)
P 		43
B 8.7
(-2.4)
A 		40.7
(2.8)
P 		42
(3)
P 		5.1
(-3)
A 		37
C 8.8
(-3)
A 		53.9
(1.6)
P 		68.2
(3)
P 		13.7
(-2.5)
P 		59
avr 10
(-3) 		46.8
(1.9) 		55.2
(3) 		11.9
(-2.7) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 11.5
(-3)
M 		38.8
(3)
P 		22.1
(-0.7)
P 		17.9
(-1.6)
A 		22.9
(-0.5)
P 		21.1
(-0.9)
P 		27
B 21.7
(-2.2)
P 		48.6
(3)
P 		17.3
(-3)
A 		18.9
(-2.7)
P 		35.1
(0.4)
P 		27.8
(-1)
P 		31
C 19.5
(-3)
P 		28.7
(0.4)
P 		20.2
(-2.7)
A 		35.6
(3)
M 		26
(-0.6)
P 		33.9
(2.4)
P 		16
avr 17.6
(-3) 		38.7
(3) 		19.9
(-2.3) 		24.1
(-1.2) 		28
(-0) 		27.6
(-0.2) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183454_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16191
Sequence Type Exemplar sequence
Representative Public ID F38B6.1 NCBI
Target Description F38B6.1 /REP_DB=WormBase Gene ID /WP=CE04514 /TR=Q20148 /GB=AAA81147.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076726(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076726 NCBI Caenorhabditis elegans F38B6.1 (F38B6.1) mRNA, complete cds. 11/11 None
GENEFINDER00000034014 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6698561:6700709:1 11/11 None
SNAP00000034008 ENSEMBL cdna:SNAP chromosome:CEL140:X:6700264:6700779:1 11/11 None
F38B6.1 ENSEMBL cdna:known chromosome:CEL140:X:6700264:6700779:1 gene:F38B6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6700263-6700779(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F38B6.1
Entrez Gene 185451 Entrez gene
SwissProt Q20148 EMBL-EBI
WormBase CE04514 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE65775 Hypothetical protein CBG10870 [Caenorhabditis briggsae] 0.0
blast AAA81146 Hypothetical protein F38B6.2 [Caenorhabditis elegans] ref|NP_509126.1| F38B6.2 [Caenorhabditis elegans] 1.0E-110
blast AAA81145 Hypothetical protein F38B6.7 [Caenorhabditis elegans] ref|NP_509125.2| F38B6.7 [Caenorhabditis elegans] 8.0E-67
blast AAA81147 Hypothetical protein F38B6.1 [Caenorhabditis elegans] ref|NP_509127.1| F38B6.1 [Caenorhabditis elegans] 5.0E-60
blast CAE65775 Hypothetical protein CBG10870 [Caenorhabditis briggsae] 3.0E-56
blast AAA81145 Hypothetical protein F38B6.7 [Caenorhabditis elegans] ref|NP_509125.2| F38B6.7 [Caenorhabditis elegans] 2.0E-13
Sequence
Target Sequence 
>C. ELEGANS:183454_AT
atgcaactttattatgaccgaccaacatccaatgggaaaactatcaatttagatgagcca
attccagacggaggattcatttctaagaaaatattcaatgcggctccaattacacaaata
gaaaacccatcacgtccgggtccaataaaagaatatcgaaaattgtggattgtgctcatt
ttcaagaccacaagcccgtttggtcgagtttatattctttccaccaaggatttgcacagc
aagtatagatcagtcaccgattttttgaaatccgacacaggaaacatgctaggaactcct
gtggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCAACTTTATTATGACCGACCAA 366 43 13 Antisense
ATGACCGACCAACATCCAATGGGAA 157 41 26 Antisense
TATTCAATGCGGCTCCAATTACACA 569 655 104 Antisense
ACAAATAGAAAACCCATCACGTCCG 587 109 126 Antisense
CCATCACGTCCGGGTCCAATAAAAG 69 271 139 Antisense
CTCATTTTCAAGACCACAAGCCCGT 431 227 187 Antisense
CACAAGCCCGTTTGGTCGAGTTTAT 583 113 201 Antisense
TCGAGTTTATATTCTTTCCACCAAG 538 601 216 Antisense
TTCCACCAAGGATTTGCACAGCAAG 87 697 231 Antisense
GTATAGATCAGTCACCGATTTTTTG 34 453 255 Antisense
GAAACATGCTAGGAACTCCTGTGGC 151 357 293 Antisense
Sequence Source Affymetrix Proprietary Database