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[183453_at]

Description Y39B6B.N /REP_DB=WormBase Gene ID /WP=CE21689 /TR=Q9NEU6 /GB=CAB60919.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 33      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 6.2
(-3)
A 		67.2
(2.4)
P 		57.2
(1.5)
A 		74.6
(3)
A 		68
B 22.9
(-3)
A 		42.6
(1.8)
A 		23.2
(-2.9)
A 		47.4
(3)
A 		25
C 38.5
(-3)
A 		41.3
(-1.7)
A 		45.8
(0.3)
A 		51.8
(3)
P 		13
avr 22.5
(-3) 		50.4
(1.7) 		42.1
(0.3) 		57.9
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 58.9
(2)
A 		29.4
(-0.6)
A 		42.6
(0.6)
A 		2.3
(-3)
A 		20.7
(-1.4)
M 		70.1
(3)
M 		68
B 16.4
(-2.5)
A 		27.9
(0.2)
A 		40.1
(3)
P 		14.1
(-3)
A 		22.1
(-1.2)
A 		26.6
(-0.1)
A 		26
C 26.9
(0.2)
A 		20.1
(-0.8)
A 		5.4
(-3)
A 		33.3
(1.1)
A 		33.3
(1.1)
A 		46
(3)
P 		41
avr 34.1
(0.4) 		25.8
(-1.2) 		29.4
(-0.5) 		16.6
(-3) 		25.4
(-1.3) 		47.6
(3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2.3
(-3)
A 		14.6
(2.9)
P 		14.9
(3)
A 		10.9
(1.1)
A 		13
B 7.3
(-0.8)
A 		10.5
(3)
A 		5.4
(-3)
A 		10.1
(2.5)
A 		5
C 12.7
(0.3)
A 		11.9
(-0.4)
A 		16
(3)
A 		8.7
(-3)
P 		7
avr 7.4
(-3) 		12.3
(3) 		12.1
(2.8) 		9.9
(0.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 10.9
(0.7)
A 		10.5
(0.6)
A 		9.3
(0.2)
A 		0.6
(-3)
A 		6.3
(-0.9)
M 		17.1
(3)
M 		17
B 5.7
(-1.1)
A 		9.3
(2.4)
A 		9.7
(2.8)
P 		3.7
(-3)
A 		9
(2.1)
A 		9.9
(3)
A 		6
C 10
(0.7)
A 		6.1
(-1)
A 		1.4
(-3)
A 		6.7
(-0.7)
A 		10.8
(1)
A 		15.4
(3)
P 		14
avr 8.9
(0) 		8.6
(-0.2) 		6.8
(-1.2) 		3.7
(-3) 		8.7
(-0.1) 		14.1
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183453_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19433
Sequence Type Exemplar sequence
Representative Public ID Y39B6B.N NCBI
Target Description Y39B6B.N /REP_DB=WormBase Gene ID /WP=CE21689 /TR=Q9NEU6 /GB=CAB60919.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171576(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171576 NCBI Caenorhabditis elegans Y39B6A.31 (Y39B6A.31) mRNA, complete cds. 11/11 None
GENEFINDER00000030690 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19011208:19015546:1 11/11 None
Y39B6A.31 ENSEMBL cdna:known chromosome:CEL140:V:19011127:19016426:1 gene:Y39B6A.31 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030533 7/11 Cross Hyb Matching Probes None
SNAP00000030534 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19011207-19015546(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39B6A.31
Entrez Gene 180247 Entrez gene
SwissProt Q9NEU6 EMBL-EBI
WormBase CE21689 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC51049 Hypothetical protein Y39B6A.31 [Caenorhabditis elegans] ref|NP_741666.1| Y39B6A.31 [Caenorhabditis elegans] 0.0
blast CAE56251 Hypothetical protein CBG23892 [Caenorhabditis briggsae] 2.0E-64
blast NP_495393 F31E8.5 [Caenorhabditis elegans] gb|AAA98022.2| Hypothetical protein F31E8.5 [Caenorhabditis elegans] 3.0E-20
Sequence
Target Sequence 
>C. ELEGANS:183453_AT
gctattcgattttgattccttctctaagaaccaaaaccgcatggcaaaatatttgtcgac
atttgaagaaccagagggagttcattcgctcttcaagccgcctgtcaatttggataaagg
ccttctaaaatctgttgatttgttgtcggttctcaaacctccagttatccaaactatgtc
aaaaatgcgttctcagttgaaagtgtgcactggatacagtaccagatcccggaatccttt
gaaaaaagcgttcggactgattacggtcgactcttggaaggtttctgaggagaatgcgca
attgccgaagagatattcgagtttctatgtggatattggagagcgttgtagttggattcg
tctgtggatcactaacattgaaaagttcgactcttacaataacagcatgaaactggacga
aactatcgatttcttctttgatcagcaattctacgtgggtccagacagtgataaagcccg
tccactggctggtcactcgggacaaatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTATTCGATTTTGATTCCTTCTCT 153 305 678 Antisense
AGAGGGAGTTCATTCGCTCTTCAAG 600 59 750 Antisense
TCTTCAAGCCGCCTGTCAATTTGGA 553 615 767 Antisense
TTGTCGGTTCTCAAACCTCCAGTTA 96 677 820 Antisense
CAGTACCAGATCCCGGAATCCTTTG 102 205 894 Antisense
GCGTTCGGACTGATTACGGTCGACT 106 1 925 Antisense
ACGGTCGACTCTTGGAAGGTTTCTG 134 93 940 Antisense
GTTGGATTCGTCTGTGGATCACTAA 529 435 1028 Antisense
ATCGATTTCTTCTTTGATCAGCAAT 19 37 1102 Antisense
GATCAGCAATTCTACGTGGGTCCAG 486 421 1117 Antisense
CTGGCTGGTCACTCGGGACAAATCA 422 241 1162 Antisense
Sequence Source Affymetrix Proprietary Database