[Home] | [Total List]

[183452_s_at]

Description Y32F6B.1 /REP_DB=WormBase Gene ID /WP=CE16610 /TR=O62421 /GB=CAA16312.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 66      4grp_highest_8_8 > 36      4grp_high_8_8 > 0      6grp_highest_nonorm > 96      6grp_total > 66      4grp_total > 63      6grp_highest_sub > Da      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 666
1 2 3 4 range
A 1073.1
(3)
P 		407.2
(-3)
P 		748.7
(0.1)
P 		785.9
(0.4)
P 		666
B 870.7
(0.6)
P 		692.9
(-3)
P 		905.6
(1.3)
P 		988.2
(3)
P 		295
C 933.1
(1.9)
P 		771.6
(-1.1)
P 		989.6
(3)
P 		674.2
(-3)
P 		315
avr 959
(3) 		623.9
(-3) 		881.3
(1.6) 		816.1
(0.4) 		335

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1005
1 2 3 4 5 6 range
A 700.6
(-2.3)
P 		658.8
(-2.8)
P 		693.3
(-2.4)
P 		767.7
(-1.7)
P 		634.3
(-3)
P 		1228.8
(3)
P 		595
B 842.2
(-2.1)
P 		767.7
(-2.6)
P 		954.5
(-1.4)
P 		916.9
(-1.6)
P 		703
(-3)
P 		1630.7
(3)
P 		928
C 753.1
(-2.2)
P 		727.5
(-2.4)
P 		687.2
(-2.6)
P 		830.2
(-1.8)
P 		625.5
(-3)
P 		1626.4
(3)
P 		1001
avr 765.3
(-2.2) 		718
(-2.5) 		778.3
(-2.1) 		838.3
(-1.7) 		654.3
(-3) 		1495.3
(3) 		841
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 302
1 2 3 4 range
A 390.7
(3)
P 		88.4
(-3)
P 		195.7
(-0.9)
P 		115
(-2.5)
P 		302
B 277.6
(3)
P 		171.1
(-3)
P 		209.9
(-0.8)
P 		210.6
(-0.8)
P 		107
C 308.9
(2.1)
P 		221.9
(-0.2)
P 		344.9
(3)
P 		113.7
(-3)
P 		231
avr 325.7
(3) 		160.5
(-2.5) 		250.2
(0.5) 		146.4
(-3) 		179

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 479
1 2 3 4 5 6 range
A 129.1
(-3)
P 		234.3
(0.7)
P 		151
(-2.2)
P 		194.7
(-0.7)
P 		191.4
(-0.8)
P 		299.2
(3)
P 		170
B 293
(-2)
P 		255.5
(-2.6)
P 		231.8
(-3)
P 		242.8
(-2.8)
P 		285.6
(-2.1)
P 		608.1
(3)
P 		376
C 279.1
(-1.2)
P 		222
(-2.1)
P 		174.9
(-2.9)
P 		167
(-3)
P 		202.4
(-2.4)
P 		544.5
(3)
P 		378
avr 233.7
(-2) 		237.3
(-2) 		185.9
(-3) 		201.5
(-2.7) 		226.5
(-2.2) 		483.9
(3) 		298
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183452_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11996
Sequence Type Exemplar sequence
Representative Public ID Y32F6B.1 NCBI
Target Description Y32F6B.1 /REP_DB=WormBase Gene ID /WP=CE16610 /TR=O62421 /GB=CAA16312.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073288(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073288 NCBI Caenorhabditis elegans Y32F6B.1 (Y32F6B.1) mRNA, complete cds. 11/11 None
SNAP00000025293 ENSEMBL cdna:SNAP chromosome:CEL140:V:10483796:10487185:-1 11/11 None
GENEFINDER00000025295 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10483796:10487263:-1 11/11 None
Y32F6B.1 ENSEMBL cdna:known chromosome:CEL140:V:10483535:10487322:-1 gene:Y32F6B.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10483795-10487257(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y32F6B.1
Entrez Gene 179463 Entrez gene
SwissProt O62421 EMBL-EBI
WormBase CE16610 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1627078_AT Organic anion transporting polypeptide 58Dc dm
DROSGENOME1:142132_AT Organic anion transporting polypeptide 58Dc dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16312 Hypothetical protein Y32F6B.1 [Caenorhabditis elegans] ref|NP_505689.1| Y32F6B.1 [Caenorhabditis elegans] 0.0
blast CAE64807 Hypothetical protein CBG09600 [Caenorhabditis briggsae] 0.0
blast CAE57287 Hypothetical protein CBG00196 [Caenorhabditis briggsae] 1.0E-133
Protein Domains
Database ID Description E-Value
Pfam IPR004157 EMBL-EBI Organic anion transporter polypeptide (OATP), C-terminal 1.4E-20
Pfam IPR004157 EMBL-EBI Organic anion transporter polypeptide (OATP), C-terminal 1.1E-22
Pfam IPR004157 EMBL-EBI Organic anion transporter polypeptide (OATP), C-terminal 2.5E-8
Pfam IPR004157 EMBL-EBI Organic anion transporter polypeptide (OATP), C-terminal 2.5E-31
Pfam IPR004157 EMBL-EBI Organic anion transporter polypeptide (OATP), C-terminal 9.2E-18
Pfam IPR004157 EMBL-EBI Organic anion transporter polypeptide (OATP), C-terminal 1.1E-22
Pfam IPR004157 EMBL-EBI Organic anion transporter polypeptide (OATP), C-terminal 2.5E-8
Pfam IPR004157 EMBL-EBI Organic anion transporter polypeptide (OATP), C-terminal 2.5E-31
Pfam IPR004157 EMBL-EBI Organic anion transporter polypeptide (OATP), C-terminal 1.4E-20
Pfam IPR004157 EMBL-EBI Organic anion transporter polypeptide (OATP), C-terminal 1.1E-22
Pfam IPR004157 EMBL-EBI Organic anion transporter polypeptide (OATP), C-terminal 2.5E-8
Pfam IPR004157 EMBL-EBI Organic anion transporter polypeptide (OATP), C-terminal 2.5E-31
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505689.1 11 7-29,44-66,73-95,229-251,263-285,311-333,398-420,435-457,470-489,598-620,627-649
Y32F6B.1 11 7-29,44-66,73-95,229-251,263-285,311-333,398-420,435-457,470-489,598-620,627-649
SNAP00000025293 10 20-42,49-71,205-227,239-261,287-309,374-396,411-433,446-465,574-596,603-625
GENEFINDER00000025295 11 9-31,46-68,75-97,231-253,265-287,313-335,400-422,437-459,472-491,600-622,629-651
Sequence
Target Sequence 
>C. ELEGANS:183452_S_AT
tttggtcgcttctttatgcatcaagcatttggcgcagtttttggaggactaggtgtggtg
cctggaatgttgattgtattgagagcagtaccaccggagcatcgtagtgtctcattaggt
ttcaacggatttttggtcagtcttttggcaacgctaccgtctccaatcatctggggaaaa
ataatagatatgtcgtgtcttctttggaaaaaatcgtgcgattcatcaggatcatgctct
gtttacgacactgatgagttaagagtcagactgcacgtcatttatggatgccttcgaatt
ttctcactcatctcggatgtttgggtctggtactgggctcgagggctgaaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGGTCGCTTCTTTATGCATCAAG 8 667 1783 Antisense
TTGAGAGCAGTACCACCGGAGCATC 659 703 1861 Antisense
GCATCGTAGTGTCTCATTAGGTTTC 388 309 1881 Antisense
TGGTCAGTCTTTTGGCAACGCTACC 171 553 1916 Antisense
CTACCGTCTCCAATCATCTGGGGAA 640 225 1936 Antisense
GATATGTCGTGTCTTCTTTGGAAAA 448 425 1969 Antisense
GGATCATGCTCTGTTTACGACACTG 279 511 2011 Antisense
GACTGCACGTCATTTATGGATGCCT 81 375 2051 Antisense
CTTCGAATTTTCTCACTCATCTCGG 641 219 2074 Antisense
TCATCTCGGATGTTTGGGTCTGGTA 306 619 2090 Antisense
GGTACTGGGCTCGAGGGCTGAAACT 686 503 2111 Antisense
Sequence Source Affymetrix Proprietary Database