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[183451_at] Lectin C-type domain

Description C49C3.14 /REP_DB=WormBase Gene ID /WP=CE19753 /TR=Q9XUF3 /GB=CAB05165.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 13      6grp_total > 25      4grp_total > 54      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 195
1 2 3 4 range
A 197
(3)
P 		141.8
(1.1)
P 		59.9
(-1.7)
P 		21.9
(-3)
A 		175
B 167
(3)
P 		98.7
(-0.2)
P 		67.9
(-1.7)
P 		40.2
(-3)
A 		127
C 195.3
(3)
P 		83.3
(-0.5)
P 		63.5
(-1.1)
P 		2.3
(-3)
A 		193
avr 186.4
(3) 		107.9
(0.1) 		63.8
(-1.5) 		21.5
(-3) 		165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 145.3
(3)
P 		107.5
(1)
P 		86.4
(-0.1)
P 		29.6
(-3)
M 		43.9
(-2.3)
P 		45.6
(-2.2)
P 		116
B 103.8
(2.6)
P 		109.1
(3)
P 		75
(0.2)
P 		81.7
(0.8)
P 		44.4
(-2.3)
P 		35.8
(-3)
P 		73
C 89
(0.4)
P 		130
(3)
P 		72.5
(-0.6)
P 		41.7
(-2.5)
P 		34.4
(-3)
P 		54.1
(-1.8)
P 		96
avr 112.7
(2.8) 		115.5
(3) 		78
(-0) 		51
(-2.2) 		40.9
(-3) 		45.2
(-2.7) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 71.7
(3)
P 		30.8
(-0.6)
P 		15.7
(-1.9)
P 		3.2
(-3)
A 		69
B 53.3
(3)
P 		24.4
(-0.9)
P 		15.7
(-2)
P 		8.6
(-3)
A 		45
C 64.7
(3)
P 		24
(-0.8)
P 		22.1
(-1)
P 		0.4
(-3)
A 		64
avr 63.2
(3) 		26.4
(-0.7) 		17.8
(-1.6) 		4.1
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 26.8
(0.8)
P 		38.2
(3)
P 		18.8
(-0.8)
P 		7.5
(-3)
M 		13.2
(-1.9)
P 		11.1
(-2.3)
P 		31
B 36.1
(2.9)
P 		36.3
(3)
P 		18.2
(-1.7)
P 		21.7
(-0.8)
P 		18
(-1.8)
P 		13.3
(-3)
P 		23
C 33
(1.7)
P 		39.7
(3)
P 		18.5
(-1.1)
P 		8.4
(-3)
P 		11.1
(-2.5)
P 		18.1
(-1.1)
P 		31
avr 32
(1.6) 		38.1
(3) 		18.5
(-1.6) 		12.5
(-3) 		14.1
(-2.6) 		14.2
(-2.6) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183451_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8989
Sequence Type Exemplar sequence
Representative Public ID C49C3.14 NCBI
Target Description C49C3.14 /REP_DB=WormBase Gene ID /WP=CE19753 /TR=Q9XUF3 /GB=CAB05165.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070690(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070690 NCBI Caenorhabditis elegans C49C3.13 (C49C3.13) mRNA, complete cds. 11/11 A 
SNAP00000040204 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17350289:17350946:1 11/11 None
C49C3.13 ENSEMBL cdna:known chromosome:CEL140:IV:17347136:17351031:1 gene:C49C3.13 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17350550-17350952(+) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain
Ensembl C49C3.13
Entrez Gene 183598 Entrez gene
SwissProt Q9XUF4 EMBL-EBI
WormBase CE32834 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05164 Hypothetical protein C49C3.13 [Caenorhabditis elegans] ref|NP_503091.2| C49C3.13 [Caenorhabditis elegans] 0.0
blast CAE57434 Hypothetical protein CBG00395 [Caenorhabditis briggsae] 1.0E-98
blast CAB05164 Hypothetical protein C49C3.13 [Caenorhabditis elegans] ref|NP_503091.2| C49C3.13 [Caenorhabditis elegans] 8.0E-62
blast CAE57435 Hypothetical protein CBG00396 [Caenorhabditis briggsae] 2.0E-51
blast CAE57435 Hypothetical protein CBG00396 [Caenorhabditis briggsae] 2.0E-43
blast CAE57437 Hypothetical protein CBG00399 [Caenorhabditis briggsae] 4.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 6.1E-5
Sequence
Target Sequence 
>C. ELEGANS:183451_AT
atggcagtaatcactgacgcagcgatgaatgaggctataagattagccttcagtacaaat
attgattcaagtgtttcgaatcaggcatggatcggaacatcttcatattctaactgggcg
cccggcaaacctgacaaagcacaaggagttgcatattccagttattgcaatgtgattgcg
ttgtcagttgttaataaaggaaaagactttggattttcacgaggtgtatggaccgattat
ccatgttcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCAGTAATCACTGACGCAGCGA 123 53 13 Antisense
GACGCAGCGATGAATGAGGCTATAA 44 381 28 Antisense
AAGATTAGCCTTCAGTACAAATATT 478 155 51 Antisense
AAGTGTTTCGAATCAGGCATGGATC 638 157 81 Antisense
AGGCATGGATCGGAACATCTTCATA 578 53 95 Antisense
CATCTTCATATTCTAACTGGGCGCC 401 213 110 Antisense
GCCCGGCAAACCTGACAAAGCACAA 134 285 132 Antisense
GCACAAGGAGTTGCATATTCCAGTT 305 317 151 Antisense
GTGATTGCGTTGTCAGTTGTTAATA 508 483 184 Antisense
AAGACTTTGGATTTTCACGAGGTGT 335 153 215 Antisense
GTATGGACCGATTATCCATGTTCAT 18 457 238 Antisense
Sequence Source Affymetrix Proprietary Database