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[183450_at]

Description F25B4.9 /REP_DB=WormBase Gene ID /WP=CE09627 /TR=Q22966 /GB=AAB37085.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 80      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 37      6grp_total > 81      4grp_total > 62      6grp_highest_sub > 04_05      6grp_cgc > 84      6grp_high1_sub > 02_03_04_05      6grp_cgc_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3293
1 2 3 4 range
A 7419.7
(3)
P 		7255.1
(2.6)
P 		6594.5
(0.8)
P 		5182.9
(-3)
P 		2237
B 8019.4
(3)
P 		6236.5
(-0.2)
P 		7278.7
(1.7)
P 		4726.5
(-3)
P 		3293
C 7553.4
(3)
P 		5110
(-2.4)
P 		6556.6
(0.8)
P 		4833.8
(-3)
P 		2720
avr 7664.2
(3) 		6200.5
(-0.2) 		6809.9
(1.1) 		4914.4
(-3) 		2750

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3177
1 2 3 4 5 6 range
A 4207.4
(-1.3)
P 		5244.8
(0.9)
P 		5102.9
(0.6)
P 		6214.1
(3)
P 		4880.2
(0.2)
P 		3393.2
(-3)
P 		2821
B 3431
(-2)
P 		4855.9
(1.8)
P 		4782.9
(1.6)
P 		5323.7
(3)
P 		5279.3
(2.9)
P 		3037.3
(-3)
P 		2286
C 4518.8
(-1.8)
P 		4580.5
(-1.7)
P 		4726.8
(-1.2)
P 		6211.7
(3)
P 		5812
(1.9)
P 		4107.5
(-3)
P 		2104
avr 4052.4
(-1.7) 		4893.7
(0.4) 		4870.9
(0.4) 		5916.5
(3) 		5323.8
(1.5) 		3512.7
(-3) 		2404
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1943
1 2 3 4 range
A 2701.5
(3)
P 		1574.9
(-0.5)
P 		1723.9
(-0)
P 		758.7
(-3)
P 		1943
B 2557.3
(3)
P 		1540.3
(-0.9)
P 		1686.7
(-0.4)
P 		1007.2
(-3)
P 		1550
C 2500.4
(3)
P 		1469.2
(-0.7)
P 		2285.2
(2.2)
P 		815.1
(-3)
P 		1685
avr 2586.4
(3) 		1528.1
(-0.7) 		1898.6
(0.6) 		860.3
(-3) 		1726

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1369
1 2 3 4 5 6 range
A 775.6
(-3)
P 		1865.3
(3)
P 		1111.3
(-1.2)
P 		1576
(1.4)
P 		1472.6
(0.8)
P 		826.1
(-2.7)
P 		1090
B 1193.8
(-2.6)
P 		1616.3
(-0.1)
P 		1161.4
(-2.8)
P 		1410.1
(-1.4)
P 		2144.9
(3)
P 		1132.6
(-3)
P 		1012
C 1674.9
(1.2)
P 		1397.7
(-1.3)
P 		1203.1
(-3)
P 		1249.2
(-2.6)
P 		1880.7
(3)
P 		1375
(-1.5)
P 		678
avr 1214.8
(-2.1) 		1626.4
(1.3) 		1158.6
(-2.6) 		1411.8
(-0.5) 		1832.7
(3) 		1111.2
(-3) 		722
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183450_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11994
Sequence Type Exemplar sequence
Representative Public ID F25B4.9 NCBI
Target Description F25B4.9 /REP_DB=WormBase Gene ID /WP=CE09627 /TR=Q22966 /GB=AAB37085.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072099(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072099 NCBI Caenorhabditis elegans C-type LECtin family member (clec-1) (clec-1) mRNA, complete cds. 11/11 None
SNAP00000033035 ENSEMBL cdna:SNAP chromosome:CEL140:V:5702809:5703487:1 11/11 None
GENEFINDER00000033038 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5702809:5703487:1 11/11 None
F25B4.9 ENSEMBL cdna:known chromosome:CEL140:V:5702605:5703673:1 gene:F25B4.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5702808-5703487(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol clec-1
Ensembl F25B4.9
Entrez Gene 178958 Entrez gene
SwissProt Q22966 EMBL-EBI
WormBase CE09627 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37085 Hypothetical protein F25B4.9 [Caenorhabditis elegans] ref|NP_504500.1| C-type LECtin family member (clec-1) [Caenorhabditis elegans] 3.0E-92
blast CAE64585 Hypothetical protein CBG09340 [Caenorhabditis briggsae] 9.0E-87
blast CAA48800 lectin [Pleurodeles waltl] sp|Q02988|LECA_PLEWA Lectin precursor 5.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 1.2E-4
Sequence
Target Sequence 
>C. ELEGANS:183450_AT
tactcttgttgtttcggcttttttgattccagaagttctcgctgatccatgcggtgattc
caactggagatatttcccacaaaccaattcctgttataagctcattgatgaaaaccttcc
atggacaattgccgagttcaagtgcctcttccaaggtgctcatcacgtctccattgacag
tccagaagagaatcaattcgttcacgaattgtctcgttggtctgagatttggactggagc
agctttctttggaaaagatcagcattacgtcaactctgatggttctcgttatggaaactt
tgagaactggaaggacggaagaaaaccaccaatgaaccgtgctcgtcgttgcatcaagat
ggacggaaacggagaatggttccaatcctgctgcaagaagaagactttcaccatttgcga
gaagaaagccgcctactctgcaagctcctactctggatccaacaactccgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACTCTTGTTGTTTCGGCTTTTTTG 120 647 30 Antisense
GATTCCAGAAGTTCTCGCTGATCCA 582 433 54 Antisense
CTGATCCATGCGGTGATTCCAACTG 447 239 71 Antisense
TCACGTCTCCATTGACAGTCCAGAA 329 627 192 Antisense
CGTCAACTCTGATGGTTCTCGTTAT 28 245 297 Antisense
AAACCACCAATGAACCGTGCTCGTC 343 125 352 Antisense
CCGTGCTCGTCGTTGCATCAAGATG 519 265 366 Antisense
GAGAATGGTTCCAATCCTGCTGCAA 450 391 401 Antisense
AAGAAGACTTTCACCATTTGCGAGA 87 147 427 Antisense
TGCGAGAAGAAAGCCGCCTACTCTG 115 579 445 Antisense
CTACTCTGGATCCAACAACTCCGTA 99 225 477 Antisense
Sequence Source Affymetrix Proprietary Database