[Home] | [Total List]

[183449_s_at]

Description F45H10.4 /REP_DB=WormBase Gene ID /WP=CE10548 /TR=O02268 /GB=CAB04386.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 82      4grp_highest_8_8 > 10      4grp_high_8_8 > 55      6grp_highest_nonorm > 64      6grp_total > 73      4grp_total > 56      6grp_highest_sub > 04      6grp_cgc > 76      6grp_high1_sub > 04      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 453
1 2 3 4 range
A 513.3
(-0.8)
P 		658.5
(2.5)
P 		678.9
(3)
P 		419.2
(-3)
P 		260
B 474.3
(-3)
P 		631.5
(-0.6)
P 		872
(3)
P 		492.7
(-2.7)
P 		398
C 463.1
(-3)
P 		629
(-0.1)
P 		801.3
(3)
P 		470.3
(-2.9)
P 		338
avr 483.6
(-2.6) 		639.7
(0.3) 		784.1
(3) 		460.7
(-3) 		323

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 837
1 2 3 4 5 6 range
A 617.5
(-2)
P 		545.6
(-3)
P 		985.1
(3)
P 		933
(2.3)
P 		983.3
(3)
P 		575.8
(-2.6)
P 		440
B 434
(-3)
P 		563.8
(-2)
P 		1043.1
(1.5)
P 		1245.3
(3)
P 		1224.9
(2.8)
P 		883.4
(0.3)
P 		811
C 408.2
(-3)
P 		598.9
(-1.6)
P 		739.3
(-0.5)
P 		1201
(3)
P 		835.6
(0.2)
P 		892.3
(0.7)
P 		793
avr 486.6
(-3) 		569.4
(-2.2) 		922.5
(1.1) 		1126.4
(3) 		1014.6
(2) 		783.8
(-0.2) 		640
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 218
1 2 3 4 range
A 186.9
(3)
P 		142.9
(0.9)
P 		177.5
(2.6)
P 		61.4
(-3)
P 		126
B 151.3
(-0.1)
P 		156
(0.2)
P 		202.1
(3)
P 		105
(-3)
P 		97
C 153.3
(-0.8)
P 		180.8
(0)
P 		279.3
(3)
P 		79.3
(-3)
P 		200
avr 163.8
(0.6) 		159.9
(0.4) 		219.6
(3) 		81.9
(-3) 		138

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 384
1 2 3 4 5 6 range
A 113.8
(-3)
P 		194.1
(-0.4)
P 		214.5
(0.3)
P 		236.6
(1)
P 		296.7
(3)
P 		140.2
(-2.1)
P 		183
B 151
(-3)
P 		187.7
(-2.4)
P 		253.3
(-1.2)
P 		329.8
(0.1)
P 		497.7
(3)
P 		329.4
(0.1)
P 		347
C 151.3
(-3)
P 		182.7
(-1.7)
P 		188.2
(-1.5)
P 		241.5
(0.7)
P 		270.4
(1.8)
P 		298.7
(3)
P 		147
avr 138.7
(-3) 		188.2
(-1.6) 		218.7
(-0.8) 		269.3
(0.6) 		354.9
(3) 		256.1
(0.3) 		216
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183449_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3268
Sequence Type Exemplar sequence
Representative Public ID F45H10.4 NCBI
Target Description F45H10.4 /REP_DB=WormBase Gene ID /WP=CE10548 /TR=O02268 /GB=CAB04386.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064439(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064439 NCBI Caenorhabditis elegans F45H10.4 (F45H10.4) mRNA, complete cds. 11/11 None
GENEFINDER00000000155 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13495012:13495688:-1 11/11 None
F45H10.4 ENSEMBL cdna:known chromosome:CEL140:II:13494956:13495759:-1 gene:F45H10.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13495008-13495685(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol drr-1
Ensembl F45H10.4
Entrez Gene 174994 Entrez gene
SwissProt O02268 EMBL-EBI
WormBase CE10548 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04386 Hypothetical protein F45H10.4 [Caenorhabditis elegans] ref|NP_496840.1| F45H10.4 [Caenorhabditis elegans] 5.0E-93
blast CAE73340 Hypothetical protein CBG20771 [Caenorhabditis briggsae] 3.0E-86
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496840.1 4 21-43,48-70,83-105,120-142
F45H10.4 4 21-43,48-70,83-105,120-142
GENEFINDER00000000155 4 21-43,48-70,83-105,120-142
Sequence
Target Sequence 
>C. ELEGANS:183449_S_AT
gtttttctcaaacttccacactattttaagccattgcaagcgattaacgctgtaattctg
gcggtttgcattggatcgacggcttccggggataatgggattctttggtttactctaatt
gttcaattaattatttccgcggcggcaacggtaatcttcgccctgcggattcaggatgag
ctcatggagagtatttcgaatggaagcatcgcgtggaatgtcgtggagctcgtgtattcc
tttattttggcggtcctctccgtgatttccgtctggctttcgttttcgttcgcgaatcgg
tcgcttttcggcacttctgcgggatatattgctgctggggttttcttcatcgtacaaaca
attttctacgctgtcccatgtactgtaatctatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTTCTCAAACTTCCACACTATT 206 449 52 Antisense
TCTGGCGGTTTGCATTGGATCGACG 292 607 108 Antisense
TGGATCGACGGCTTCCGGGGATAAT 459 543 123 Antisense
ATTTCCGCGGCGGCAACGGTAATCT 636 5 184 Antisense
TAATCTTCGCCCTGCGGATTCAGGA 3 637 203 Antisense
ATGTCGTGGAGCTCGTGTATTCCTT 481 47 269 Antisense
TCGTTCGCGAATCGGTCGCTTTTCG 258 601 337 Antisense
CTTTTCGGCACTTCTGCGGGATATA 423 219 355 Antisense
ATATTGCTGCTGGGGTTTTCTTCAT 177 19 377 Antisense
CAAACAATTTTCTACGCTGTCCCAT 462 191 406 Antisense
GCTGTCCCATGTACTGTAATCTATC 483 295 421 Antisense
Sequence Source Affymetrix Proprietary Database