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[183447_s_at]

Description W09B7.3 /REP_DB=WormBase Gene ID /WP=CE26030 /TR=Q9N5A7 /GB=AAF60390.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 03      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 228
1 2 3 4 range
A 35.4
(-1.5)
A 		5.8
(-3)
A 		9.9
(-2.8)
A 		121.4
(3)
P 		116
B 37.3
(-1.9)
A 		27.5
(-2.4)
A 		17.8
(-3)
A 		122
(3)
P 		104
C 60.2
(-1.6)
A 		35.2
(-2.2)
A 		6.5
(-3)
A 		234.1
(3)
P 		228
avr 44.3
(-1.7) 		22.8
(-2.5) 		11.4
(-3) 		159.2
(3) 		148

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 364
1 2 3 4 5 6 range
A 10.3
(-3)
A 		21.4
(-2.8)
A 		30.7
(-2.5)
A 		19.8
(-2.8)
A 		63.3
(-1.8)
A 		282
(3)
P 		272
B 27.8
(-2.7)
A 		13.3
(-3)
A 		32.2
(-2.6)
A 		36
(-2.5)
A 		141
(-0.2)
P 		289.9
(3)
P 		277
C 5.3
(-3)
A 		81.6
(-1.7)
A 		14.9
(-2.8)
A 		4.4
(-3)
A 		156.1
(-0.5)
P 		368
(3)
P 		364
avr 14.5
(-3) 		38.8
(-2.5) 		25.9
(-2.8) 		20.1
(-2.9) 		120.1
(-0.9) 		313.3
(3) 		299
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 12.9
(1.2)
A 		1.3
(-3)
A 		2.6
(-2.5)
A 		17.8
(3)
P 		17
B 11.9
(-0.9)
A 		6.8
(-2.3)
A 		4.1
(-3)
A 		26
(3)
P 		22
C 19.9
(-0.2)
A 		10.1
(-1.7)
A 		2.3
(-3)
A 		39.5
(3)
P 		37
avr 14.9
(-0.1) 		6.1
(-2.3) 		3
(-3) 		27.8
(3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 1.9
(-3)
A 		7.6
(-2.5)
A 		6.7
(-2.6)
A 		5
(-2.7)
A 		19.1
(-1.5)
A 		68.7
(3)
P 		67
B 9.7
(-2.7)
A 		4.4
(-3)
A 		7.8
(-2.8)
A 		9.5
(-2.7)
A 		57.3
(0.1)
P 		108.1
(3)
P 		104
C 2
(-2.9)
A 		24.9
(-1.8)
A 		3.8
(-2.9)
A 		0.9
(-3)
A 		50.5
(-0.6)
P 		123.2
(3)
P 		122
avr 4.5
(-3) 		12.3
(-2.5) 		6.1
(-2.9) 		5.1
(-3) 		42.3
(-0.6) 		100
(3) 		96
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183447_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12163
Sequence Type Exemplar sequence
Representative Public ID W09B7.3 NCBI
Target Description W09B7.3 /REP_DB=WormBase Gene ID /WP=CE26030 /TR=Q9N5A7 /GB=AAF60390.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072868(11), NM_072882(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072868 NCBI Caenorhabditis elegans W09B7.3 (W09B7.3) mRNA, complete cds. 11/11 None
NM_072882 NCBI Caenorhabditis elegans F07B7.14 (F07B7.14) mRNA, complete cds. 11/11 None
GENEFINDER00000015143 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8867938:8869884:-1 11/11 None
GENEFINDER00000023237 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8825844:8827790:-1 11/11 None
W09B7.3 ENSEMBL cdna:known chromosome:CEL140:V:8825844:8827988:-1 gene:W09B7.3 11/11 None
F07B7.14 ENSEMBL cdna:known chromosome:CEL140:V:8867938:8871422:-1 gene:F07B7.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8825844-8827989(-) 100.0 100.0
chrV:8867938-8870083(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl W09B7.3
F07B7.14
Entrez Gene 184120 Entrez gene
189308 Entrez gene
SwissProt Q965Y8 EMBL-EBI
Q9N5A7 EMBL-EBI
WormBase CE21281 Wormbase
CE26030 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84510 Hypothetical protein F07B7.14 [Caenorhabditis elegans] ref|NP_505283.1| F07B7.14 [Caenorhabditis elegans] 0.0
blast AAF60390 Hypothetical protein W09B7.3 [Caenorhabditis elegans] ref|NP_505269.1| W09B7.3 [Caenorhabditis elegans] 1.0E-153
blast AAK84510 Hypothetical protein F07B7.14 [Caenorhabditis elegans] ref|NP_505283.1| F07B7.14 [Caenorhabditis elegans] 1.0E-148
blast AAF60390 Hypothetical protein W09B7.3 [Caenorhabditis elegans] ref|NP_505269.1| W09B7.3 [Caenorhabditis elegans] 1.0E-147
blast AAF60390 Hypothetical protein W09B7.3 [Caenorhabditis elegans] ref|NP_505269.1| W09B7.3 [Caenorhabditis elegans] 1.0E-124
blast AAK84510 Hypothetical protein F07B7.14 [Caenorhabditis elegans] ref|NP_505283.1| F07B7.14 [Caenorhabditis elegans] 1.0E-124
Protein Domains
Database ID Description E-Value
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 9.7E-22
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 3.4E-5
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 9.7E-22
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 3.4E-5
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 9.7E-22
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 3.4E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505269.1 1 32-54
NP_505283.1 1 156-175
W09B7.3 1 32-54
F07B7.14 1 156-175
Sequence
Target Sequence 
>C. ELEGANS:183447_S_AT
atgcaggttccattgacttttacaagaaagaagattctgataaaatgaacatgatgtgtg
aaggatttacagtgtgcgccgagtatttgaaatgcaaagctgaaattaaagtagtttatt
acatcgacaaaattgtttcattttgtgctgccactggattcctatcaactgatttcaaag
aatgtaatcacaaactatacgtacaaaactctacgtgtgttcaagagtgggaaccactac
ccgatccagtggaggaccctgtggaaatggcagcgattcaaaaagaagcatgtaaaaata
ttctgggaaaggaaagttgtgtggaaaaggaaataattgaaaattgtaatgtcgaattgg
ccgtgaattttcgcaaacacttcctcgcactgcacagaataattggagcatacgacccag
ttgtaatggctaaaattaagagagaagggtgtaagacagtattggggagagatcgctgtg
tggagaaggaaataactgaaagttgcaattctgaattggccgtgaattttggcaagcacc
tccttgcact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCAGGTTCCATTGACTTTTACAA 445 43 266 Antisense
GGATTTACAGTGTGCGCCGAGTATT 649 509 328 Antisense
AATTGTTTCATTTTGTGCTGCCACT 407 179 396 Antisense
TGCTGCCACTGGATTCCTATCAACT 495 581 411 Antisense
ACTACCCGATCCAGTGGAGGACCCT 326 89 501 Antisense
GGAGGACCCTGTGGAAATGGCAGCG 485 515 516 Antisense
TGAATTTTCGCAAACACTTCCTCGC 566 575 629 Antisense
CACTTCCTCGCACTGCACAGAATAA 260 197 643 Antisense
TGGAGCATACGACCCAGTTGTAATG 1 549 669 Antisense
ATTGGGGAGAGATCGCTGTGTGGAG 192 3 726 Antisense
ATTTTGGCAAGCACCTCCTTGCACT 187 15 791 Antisense
Sequence Source Affymetrix Proprietary Database