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[183446_at]

Description C45H4.1 /REP_DB=WormBase Gene ID /WP=CE08735 /TR=O44705 /GB=AAC25882.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 04      6grp_cgc > 64      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 46.5
(-0.1)
A 		11.8
(-3)
A 		51
(0.3)
A 		84.1
(3)
A 		72
B 78.8
(3)
A 		61.6
(-0.5)
A 		49.4
(-3)
A 		53
(-2.3)
A 		29
C 25.8
(-3)
A 		59.9
(0.3)
A 		31.3
(-2.5)
A 		87.2
(3)
M 		61
avr 50.4
(-1.7) 		44.4
(-2.9) 		43.9
(-3) 		74.8
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 20.8
(-2)
A 		61.8
(1)
A 		46.2
(-0.1)
A 		76
(2)
A 		89.3
(3)
A 		6.7
(-3)
A 		83
B 33.7
(-1.5)
A 		50.5
(0.8)
A 		67.1
(3)
A 		47.7
(0.4)
A 		58.1
(1.8)
A 		22.7
(-3)
A 		44
C 33
(-0.6)
A 		67.3
(3)
A 		10.5
(-3)
A 		12.5
(-2.8)
A 		28.6
(-1.1)
A 		55.5
(1.8)
A 		57
avr 29.2
(-2.8) 		59.9
(3) 		41.3
(-0.5) 		45.4
(0.2) 		58.7
(2.8) 		28.3
(-3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 16.9
(3)
A 		2.6
(-3)
A 		13.3
(1.5)
A 		12.3
(1.1)
A 		14
B 25.1
(3)
A 		15.2
(-1.3)
A 		11.4
(-3)
A 		11.3
(-3)
A 		14
C 8.6
(-3)
A 		17.2
(3)
A 		10.9
(-1.4)
A 		14.7
(1.3)
M 		9
avr 16.9
(3) 		11.7
(-3) 		11.9
(-2.8) 		12.8
(-1.7) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 3.8
(-2.5)
A 		22
(1.8)
A 		10.1
(-1)
A 		19.3
(1.2)
A 		27
(3)
A 		1.6
(-3)
A 		25
B 11.7
(-1.7)
A 		16.8
(0.3)
A 		16.3
(0.1)
A 		12.6
(-1.4)
A 		23.6
(3)
A 		8.5
(-3)
A 		15
C 12.2
(0.2)
A 		20.5
(3)
A 		2.7
(-2.9)
A 		2.5
(-3)
A 		9.2
(-0.8)
A 		18.6
(2.4)
A 		18
avr 9.2
(-3) 		19.8
(2.9) 		9.7
(-2.7) 		11.5
(-1.7) 		19.9
(3) 		9.6
(-2.8) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183446_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14973
Sequence Type Exemplar sequence
Representative Public ID C45H4.1 NCBI
Target Description C45H4.1 /REP_DB=WormBase Gene ID /WP=CE08735 /TR=O44705 /GB=AAC25882.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071192(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071192 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-16) (srbc-16) mRNA, complete cds. 11/11 None
SNAP00000009349 ENSEMBL cdna:SNAP chromosome:CEL140:V:2182151:2183019:1 9/11 None
GENEFINDER00000009353 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2181866:2183019:1 10/11 None
C45H4.1 ENSEMBL cdna:known chromosome:CEL140:V:2181866:2183019:1 gene:C45H4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2181865-2183009(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srbc-16
Ensembl C45H4.1
Entrez Gene 183483 Entrez gene
SwissProt O44705 EMBL-EBI
WormBase CE38045 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC25882 Serpentine receptor, class bc (class b-like) protein 16 [Caenorhabditis elegans] ref|NP_503593.2| Serpentine Receptor, class BC (class B-like) family member (srbc-16) [Caenorhabditis elegans] 1.0E-158
blast AAC25882 Serpentine receptor, class bc (class b-like) protein 16 [Caenorhabditis elegans] ref|NP_503593.2| Serpentine Receptor, class BC (class B-like) family member (srbc-16) [Caenorhabditis elegans] 1.0E-132
blast AAW88408 Serpentine receptor, class bc (class b-like) protein 17 [Caenorhabditis elegans] ref|NP_503591.2| Serpentine Receptor, class BC (class B-like) family member (srbc-17) [Caenorhabditis elegans] 1.0E-114
blast T32727 hypothetical protein C45H4.3 - Caenorhabditis elegans 1.0E-100
blast AAW88408 Serpentine receptor, class bc (class b-like) protein 17 [Caenorhabditis elegans] ref|NP_503591.2| Serpentine Receptor, class BC (class B-like) family member (srbc-17) [Caenorhabditis elegans] 3.0E-95
blast T32727 hypothetical protein C45H4.3 - Caenorhabditis elegans 6.0E-81
blast AAC25882 Serpentine receptor, class bc (class b-like) protein 16 [Caenorhabditis elegans] ref|NP_503593.2| Serpentine Receptor, class BC (class B-like) family member (srbc-16) [Caenorhabditis elegans] 7.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 6.3E-107
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 5.3E-49
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 3.6
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 1.6E-91
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 3.6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503593.2 7 6-28,49-68,78-100,120-142,175-197,210-232,242-264
C45H4.1 7 6-28,49-68,78-100,120-142,175-197,210-232,242-264
SNAP00000009349 1 46-68
GENEFINDER00000009353 5 6-28,49-68,78-100,120-142,176-195
Sequence
Target Sequence 
>C. ELEGANS:183446_AT
atcggagcggctaggtcgttgaccgccttgacaatttcggtggaacgtgtgatggctgta
tatgtaccgataacctaccgcaactaccgcccgtatttcccaacatttgtgattccaatt
tttgcaattggcttcggagcttctgacatcttcgttctttttaatatttgcgactaccag
gtcaacgttccaaaggagtgtgctgctttgggatgttgtattaatgcttgtttcaataaa
tattacagcatcaataaagggacagcttatattttgactgtaatgtttgcaatactacta
tccacgaaattattttttcttaacaaagactcaactgagcagaaaaccctgtccaaagct
aaccttctagctcttatcgatgcggctaacgtgattatttttcacttttcaccaattctg
tttgcgtttttgttcaagcactggtttacagcacaggcggagatgattttaatccaatat
ctaaattttaaattttcagaatattgggccaattggagtggtatcaaaaatgtggggttg
tgccttggaagctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGGAGCGGCTAGGTCGTTGACCG 613 31 277 Antisense
TCGTTGACCGCCTTGACAATTTCGG 491 603 292 Antisense
TATGTACCGATAACCTACCGCAACT 544 655 337 Antisense
GCCCGTATTTCCCAACATTTGTGAT 258 285 365 Antisense
AATTGGCTTCGGAGCTTCTGACATC 607 179 402 Antisense
TTCTGACATCTTCGTTCTTTTTAAT 232 695 417 Antisense
GCGACTACCAGGTCAACGTTCCAAA 222 287 446 Antisense
AGTGTGCTGCTTTGGGATGTTGTAT 454 59 473 Antisense
ACCTTCTAGCTCTTATCGATGCGGC 531 87 638 Antisense
TTTTCACTTTTCACCAATTCTGTTT 402 675 675 Antisense
ATGTGGGGTTGTGCCTTGGAAGCTC 136 47 806 Antisense
Sequence Source Affymetrix Proprietary Database