[Home] | [Total List]

[183445_at]

Description C40D2.3 /REP_DB=WormBase Gene ID /WP=CE19375 /TR=O76557 /GB=AAC26266.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 26      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 6.2
(-3)
A 		66.6
(1.4)
P 		37.7
(-0.7)
A 		89.3
(3)
P 		83
B 25.1
(-0.4)
A 		42
(3)
A 		12.3
(-3)
A 		21.4
(-1.2)
A 		30
C 43.6
(1.6)
A 		28.7
(-3)
A 		37.9
(-0.2)
M 		48.2
(3)
A 		20
avr 25
(-3) 		45.8
(1.5) 		29.3
(-2.1) 		53
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 53.1
(-1.9)
A 		78.1
(-1)
P 		196.5
(3)
P 		170.4
(2.1)
P 		96.5
(-0.4)
P 		20.5
(-3)
A 		176
B 42.9
(-3)
A 		126.5
(0.4)
P 		128.9
(0.5)
P 		188.5
(3)
P 		116.2
(0)
P 		70.4
(-1.9)
P 		146
C 17.2
(-3)
A 		112
(1)
P 		118.5
(1.3)
P 		159.2
(3)
P 		102.5
(0.6)
P 		58.8
(-1.2)
P 		142
avr 37.7
(-3) 		105.5
(0) 		148
(1.9) 		172.7
(3) 		105.1
(-0) 		49.9
(-2.5) 		135
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.3
(-3)
A 		14.4
(3)
P 		9.9
(0.8)
A 		13.1
(2.4)
P 		12
B 8
(1.1)
A 		10.4
(3)
A 		2.9
(-3)
A 		4.6
(-1.6)
A 		8
C 14.4
(3)
A 		8.2
(-2.9)
A 		13.2
(1.9)
M 		8.1
(-3)
A 		6
avr 8.2
(-3) 		11
(3) 		8.7
(-1.9) 		8.6
(-2.1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 9.8
(-2.2)
A 		27.8
(0.6)
P 		42.8
(2.9)
P 		43.2
(3)
P 		29.1
(0.8)
P 		5
(-3)
A 		38
B 14.9
(-3)
A 		42.1
(1.7)
P 		31.3
(-0.2)
P 		49.9
(3)
P 		47.2
(2.5)
P 		26.3
(-1)
P 		35
C 6.4
(-3)
A 		34.2
(3)
P 		30.2
(2.1)
P 		32
(2.5)
P 		33.2
(2.8)
P 		19.7
(-0.1)
P 		28
avr 10.4
(-3) 		34.7
(1.7) 		34.8
(1.7) 		41.7
(3) 		36.5
(2) 		17
(-1.7) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183445_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4202
Sequence Type Exemplar sequence
Representative Public ID C40D2.3 NCBI
Target Description C40D2.3 /REP_DB=WormBase Gene ID /WP=CE19375 /TR=O76557 /GB=AAC26266.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061744(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061744 NCBI Caenorhabditis elegans C40D2.3 (C40D2.3) mRNA, complete cds. 11/11 None
SNAP00000024876 ENSEMBL cdna:SNAP chromosome:CEL140:II:1994048:1995657:1 11/11 None
GENEFINDER00000024884 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1994048:1995657:1 11/11 None
C40D2.3 ENSEMBL cdna:known chromosome:CEL140:II:1994048:1995657:1 gene:C40D2.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005797 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1994046-1995656(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C40D2.3
Entrez Gene 183363 Entrez gene
SwissProt O76557 EMBL-EBI
WormBase CE19375 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26266 Hypothetical protein C40D2.3 [Caenorhabditis elegans] ref|NP_494145.1| C40D2.3 [Caenorhabditis elegans] 0.0
blast AAB70958 Hypothetical protein C46F9.3 [Caenorhabditis elegans] ref|NP_494116.1| C46F9.3 [Caenorhabditis elegans] 1.0E-146
blast AAB70956 Hypothetical protein C46F9.2 [Caenorhabditis elegans] ref|NP_494117.1| C46F9.2 [Caenorhabditis elegans] 1.0E-140
blast AAB70958 Hypothetical protein C46F9.3 [Caenorhabditis elegans] ref|NP_494116.1| C46F9.3 [Caenorhabditis elegans] 1.0E-140
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 2.9E-41
Pfam IPR002083 EMBL-EBI MATH 5.9E-28
Pfam IPR002083 EMBL-EBI MATH 2.7E-48
Pfam IPR002083 EMBL-EBI MATH 2.0E-32
Pfam IPR002083 EMBL-EBI MATH 5.9E-28
Pfam IPR002083 EMBL-EBI MATH 2.7E-48
Sequence
Target Sequence 
>C. ELEGANS:183445_AT
aagcctgggggcaattatcaagaagttgagtttattaattggaaagttatggaagaagaa
tatatggacagcgatagtatttgcgttgaagctcatgtaaaaatttgtaagactcaagaa
ttgccatgcaatattctatctacacatagaaaatttgtactatcccatactgtgagaaat
atatcaagtataaatggaggaaacgtatattttacagacatagaaacacgcttcaacgtt
ccttggaaactgtcgtttgtaagacaaagcggatttatcgaactatacctccgatgcgaa
aagaaacaatgcctatccagaacctggtcgattgaagccgagtttacattaaaattagtg
tcaccccatggaagaagtttatcgttacggaaaatatattcatttgaaaaatcaattggt
aatggttactctaaagtcatgagatgggatgaaatgaaggacaagtacgttgttgataac
agtatcataattgaagctcacgtcaagattctgaatatgactggaattgaatctgaaacc
actattaagaagacatctggatttacaatacccgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCCTGGGGGCAATTATCAAGAAG 17 149 709 Antisense
GGACAGCGATAGTATTTGCGTTGAA 69 527 774 Antisense
GTAAGACTCAAGAATTGCCATGCAA 191 461 815 Antisense
GAAACACGCTTCAACGTTCCTTGGA 130 357 931 Antisense
AGCGGATTTATCGAACTATACCTCC 645 81 976 Antisense
CGAACTATACCTCCGATGCGAAAAG 332 253 987 Antisense
AAACAATGCCTATCCAGAACCTGGT 683 127 1012 Antisense
GAACCTGGTCGATTGAAGCCGAGTT 657 345 1028 Antisense
ATTAGTGTCACCCCATGGAAGAAGT 604 13 1062 Antisense
AAGCTCACGTCAAGATTCTGAATAT 64 151 1202 Antisense
GACATCTGGATTTACAATACCCGTT 109 369 1260 Antisense
Sequence Source Affymetrix Proprietary Database