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[183444_at]

Description D2062.4 /REP_DB=WormBase Gene ID /WP=CE09091 /TR=O16598 /GB=AAB66066.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 2.6
(-3)
A 		6.5
(-2.5)
A 		16.6
(-1.3)
A 		50.7
(3)
A 		48
B 10.6
(-1.5)
A 		3.4
(-3)
A 		4.9
(-2.7)
A 		31.8
(3)
A 		28
C 5.1
(-2.6)
A 		1.8
(-3)
A 		1.5
(-3)
A 		51.9
(3)
A 		50
avr 6.1
(-2.7) 		3.9
(-3) 		7.7
(-2.4) 		44.8
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 3.7
(-2.4)
A 		2.4
(-3)
A 		15.6
(3)
A 		7.2
(-0.8)
A 		3.1
(-2.7)
A 		12.1
(1.4)
A 		13
B 3
(-2.7)
A 		2.1
(-3)
A 		1.9
(-3)
A 		26.8
(3)
A 		21.4
(1.7)
A 		21.6
(1.7)
A 		25
C 4.4
(-2.3)
A 		23.9
(3)
A 		2
(-3)
A 		4.7
(-2.3)
A 		4.4
(-2.3)
A 		8.1
(-1.3)
A 		22
avr 3.7
(-3) 		9.5
(0.4) 		6.5
(-1.4) 		12.9
(2.4) 		9.6
(0.5) 		13.9
(3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.9
(-3)
A 		1.4
(-2.5)
A 		4.3
(0.1)
A 		7.4
(3)
A 		7
B 3.4
(-0.4)
A 		0.8
(-3)
A 		1.1
(-2.7)
A 		6.8
(3)
A 		6
C 1.7
(-2.1)
A 		0.5
(-3)
A 		0.5
(-3)
A 		8.8
(3)
A 		8
avr 2
(-2) 		0.9
(-3) 		2
(-2) 		7.7
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.7
(-3)
A 		0.9
(-2.6)
A 		3.4
(3)
A 		1.8
(-0.6)
A 		1
(-2.3)
A 		3
(2.1)
A 		3
B 1
(-2.6)
A 		0.7
(-2.9)
A 		0.5
(-3)
A 		7.1
(1.8)
A 		8.7
(3)
A 		8.1
(2.6)
A 		8
C 1.6
(-2)
A 		7.3
(3)
A 		0.5
(-3)
A 		1
(-2.6)
A 		1.4
(-2.2)
A 		2.7
(-1.1)
A 		7
avr 1.1
(-3) 		3
(0.3) 		1.5
(-2.3) 		3.3
(0.8) 		3.7
(1.5) 		4.6
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183444_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4758
Sequence Type Exemplar sequence
Representative Public ID D2062.4 NCBI
Target Description D2062.4 /REP_DB=WormBase Gene ID /WP=CE09091 /TR=O16598 /GB=AAB66066.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061908
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061908 NCBI Caenorhabditis elegans D2062.4 (D2062.4) mRNA, complete cds. A 
D2062.4 ENSEMBL cdna:known chromosome:CEL140:II:2623924:2624531:1 gene:D2062.4 A 
SNAP00000009055 ENSEMBL cdna:SNAP chromosome:CEL140:II:2623924:2624684:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2623922-2624646(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2062.4
Entrez Gene 183954 Entrez gene
SwissProt O16598 EMBL-EBI
WormBase CE29744 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494309 D2062.4 [Caenorhabditis elegans] gb|AAB66066.2| Hypothetical protein D2062.4 [Caenorhabditis elegans] 5.0E-72
blast NP_494309 D2062.4 [Caenorhabditis elegans] gb|AAB66066.2| Hypothetical protein D2062.4 [Caenorhabditis elegans] 2.0E-57
blast NP_494308 D2062.5 [Caenorhabditis elegans] gb|AAB66063.1| Hypothetical protein D2062.5 [Caenorhabditis elegans] 1.0E-56
blast NP_494308 D2062.5 [Caenorhabditis elegans] gb|AAB66063.1| Hypothetical protein D2062.5 [Caenorhabditis elegans] 8.0E-54
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494309.2 1 29-51
D2062.4 1 29-51
SNAP00000009055 1 12-34
Sequence
Target Sequence 
>C. ELEGANS:183444_AT
ggaaatttccggtatgttctctctccacttcttttcatttcccgaataccaattttcaga
tgaatacaaggcttacacattccaaatttggctcatgacagctgccatgctaattttaac
ggcgttcggcgcagctatcgccattttcttgagaatgtggcttatgagacagcttaatca
atctctggttcacgcagctgctggcatggagactaccgcaaggattttgaagaaagcgtg
cctggacccaatgacagttgcagtgatggccgacgaaaagcgcgagaaaaaggataccga
tgtgagttcaggccaggcccgagttcaggccgatcaagttatcaagcctcagaatttttt
tttccagatttgcgatcaattcgacagtcttcacaagaaacctctgaagcattgcgctga
cctcttcggctacgacacacttaccaaggactaccttcgattcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAATTTCCGGTATGTTCTCTCTC 474 527 15 Antisense
TTCTTTTCATTTCCCGAATACCAAT 568 689 43 Antisense
AATACAAGGCTTACACATTCCAAAT 58 173 77 Antisense
AATTTGGCTCATGACAGCTGCCATG 134 175 99 Antisense
GACAGCTGCCATGCTAATTTTAACG 166 369 111 Antisense
TTTTAACGGCGTTCGGCGCAGCTAT 420 667 128 Antisense
GCTTAATCAATCTCTGGTTCACGCA 67 305 186 Antisense
TACCGATGTGAGTTCAGGCCAGGCC 77 647 309 Antisense
CAGGCCCGAGTTCAGGCCGATCAAG 324 197 328 Antisense
GCCGATCAAGTTATCAAGCCTCAGA 276 285 343 Antisense
CTTACCAAGGACTACCTTCGATTCG 486 213 454 Antisense
Sequence Source Affymetrix Proprietary Database