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[183443_s_at]

Description C26B2.7 /REP_DB=WormBase Gene ID /WP=CE04093 /TR=Q18196 /GB=AAC24261.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 74      4grp_highest_8_8 > 27      4grp_high_8_8 > 56      6grp_highest_nonorm > 73      6grp_total > 75      4grp_total > 63      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 205
1 2 3 4 range
A 406.7
(-3)
P 		413.6
(-2.6)
P 		510.9
(2.8)
P 		514.5
(3)
P 		108
B 508
(3)
P 		390.6
(-3)
P 		502.5
(2.7)
P 		506.3
(2.9)
P 		117
C 543.8
(2.1)
P 		452.4
(-0.6)
P 		575.5
(3)
P 		370.8
(-3)
P 		205
avr 486.2
(0.6) 		418.9
(-3) 		529.6
(3) 		463.9
(-0.6) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 308
1 2 3 4 5 6 range
A 395.4
(-3)
P 		550
(0.5)
P 		615.7
(2)
P 		660.5
(3)
P 		402.4
(-2.8)
P 		411
(-2.6)
P 		265
B 442.4
(-3)
P 		559.5
(0.2)
P 		441.5
(-3)
P 		589.6
(1)
P 		467.1
(-2.3)
P 		665.5
(3)
P 		224
C 427.5
(-3)
P 		545.3
(-0.4)
P 		498.4
(-1.5)
P 		530.1
(-0.8)
P 		535.6
(-0.7)
P 		703.7
(3)
P 		276
avr 421.8
(-3) 		551.6
(1.5) 		518.5
(0.4) 		593.4
(3) 		468.4
(-1.4) 		593.4
(3) 		172
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 148.1
(3)
P 		89.8
(-1.8)
P 		133.6
(1.8)
P 		75.3
(-3)
P 		73
B 162
(3)
P 		96.5
(-3)
P 		116.4
(-1.2)
P 		107.9
(-2)
P 		66
C 180
(2.1)
P 		130.1
(-0.1)
P 		200.6
(3)
P 		62.5
(-3)
P 		138
avr 163.4
(3) 		105.5
(-1.3) 		150.2
(2) 		81.9
(-3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 175
1 2 3 4 5 6 range
A 72.9
(-3)
P 		195.6
(3)
P 		134.1
(-0)
P 		167.5
(1.6)
P 		121.4
(-0.6)
P 		100.1
(-1.7)
P 		123
B 153.9
(-1)
P 		186.3
(0.4)
P 		107.2
(-3)
P 		156.2
(-0.9)
P 		189.8
(0.5)
P 		248.1
(3)
P 		141
C 158.5
(-0.6)
P 		166.4
(-0.2)
P 		126.9
(-2.1)
P 		106.6
(-3)
P 		173.3
(0.1)
P 		235.6
(3)
P 		129
avr 128.4
(-2.5) 		182.8
(2) 		122.7
(-3) 		143.4
(-1.3) 		161.5
(0.2) 		194.6
(3) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183443_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8758
Sequence Type Exemplar sequence
Representative Public ID C26B2.7 NCBI
Target Description C26B2.7 /REP_DB=WormBase Gene ID /WP=CE04093 /TR=Q18196 /GB=AAC24261.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068941(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068941 NCBI Caenorhabditis elegans C26B2.7 (C26B2.7) mRNA, complete cds. 11/11 None
SNAP00000044200 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8016262:8016773:1 11/11 None
GENEFINDER00000044213 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8016262:8016773:1 11/11 None
C26B2.7 ENSEMBL cdna:known chromosome:CEL140:IV:8016220:8016867:1 gene:C26B2.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8016267-8016779(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C26B2.7
Entrez Gene 177599 Entrez gene
SwissProt Q18196 EMBL-EBI
WormBase CE04093 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24261 Hypothetical protein C26B2.7 [Caenorhabditis elegans] ref|NP_501342.1| C26B2.7 [Caenorhabditis elegans] 6.0E-72
blast CAE70936 Hypothetical protein CBG17739 [Caenorhabditis briggsae] 8.0E-62
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501342.1 1 83-105
C26B2.7 1 83-105
SNAP00000044200 1 83-105
GENEFINDER00000044213 1 83-105
Sequence
Target Sequence 
>C. ELEGANS:183443_S_AT
atgggcttatcgatcagagcttgtcggccgacatgacctcgataaaaatcatcgtaatac
atggatggcttacctaatcattattcttgtcggattcggtgcgtttgtaacagtgaaatc
tcaggtggtaatgggtcgacgccaggaaatggatgctcgcgaagctctcagaaaggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGCTTATCGATCAGAGCTTGTC 3 51 198 Antisense
AGAGCTTGTCGGCCGACATGACCTC 35 69 213 Antisense
TCGGCCGACATGACCTCGATAAAAA 580 607 221 Antisense
TACATGGATGGCTTACCTAATCATT 349 643 255 Antisense
GGCTTACCTAATCATTATTCTTGTC 419 537 264 Antisense
TATTCTTGTCGGATTCGGTGCGTTT 454 661 279 Antisense
GATTCGGTGCGTTTGTAACAGTGAA 104 457 290 Antisense
ATCTCAGGTGGTAATGGGTCGACGC 494 31 315 Antisense
GGGTCGACGCCAGGAAATGGATGCT 682 495 330 Antisense
AAATGGATGCTCGCGAAGCTCTCAG 370 121 344 Antisense
TGCTCGCGAAGCTCTCAGAAAGGAG 635 581 351 Antisense
Sequence Source Affymetrix Proprietary Database