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[183442_at]

Description K10D11.2 /REP_DB=WormBase Gene ID /WP=CE18883 /TR=O17945 /GB=CAB03526.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 03      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 10.3
(-3)
A 		10.2
(-3)
A 		17.6
(-2.5)
A 		101.8
(3)
A 		92
B 16.2
(-0.9)
A 		11.4
(-1.9)
A 		34.9
(3)
A 		5.9
(-3)
A 		29
C 58.1
(2.9)
A 		49.6
(1.9)
A 		9.8
(-3)
A 		58.9
(3)
A 		49
avr 28.2
(-1.7) 		23.7
(-2.5) 		20.8
(-3) 		55.5
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 61.4
(3)
A 		15.6
(-1.8)
A 		18.4
(-1.5)
A 		11.4
(-2.3)
A 		4.4
(-3)
A 		24
(-0.9)
A 		57
B 13.4
(-0.9)
A 		5.8
(-2.8)
A 		28.8
(3)
A 		5.2
(-3)
A 		9.7
(-1.9)
A 		7.6
(-2.4)
A 		24
C 7.7
(-2.4)
A 		52.8
(3)
A 		9.2
(-2.3)
A 		11.8
(-1.9)
A 		3.1
(-3)
A 		4.3
(-2.9)
A 		50
avr 27.5
(3) 		24.7
(2.2) 		18.8
(0.6) 		9.5
(-2) 		5.7
(-3) 		12
(-1.3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 3.7
(-2.3)
A 		2.2
(-3)
A 		4.6
(-1.9)
A 		14.9
(3)
A 		13
B 5.2
(0.4)
A 		2.8
(-1.7)
A 		8.1
(3)
A 		1.3
(-3)
A 		7
C 19.2
(3)
A 		14.3
(1.1)
A 		3.4
(-3)
A 		9.9
(-0.5)
A 		16
avr 9.4
(3) 		6.4
(-1.5) 		5.4
(-3) 		8.7
(2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 11.3
(3)
A 		5.6
(-0.4)
A 		4
(-1.4)
A 		2.9
(-2)
A 		1.3
(-3)
A 		5.8
(-0.3)
A 		10
B 4.7
(0.5)
A 		1.9
(-2.5)
A 		7
(3)
A 		1.4
(-3)
A 		3.9
(-0.3)
A 		2.8
(-1.5)
A 		6
C 2.9
(-2.2)
A 		16.1
(3)
A 		2.4
(-2.4)
A 		2.4
(-2.4)
A 		1
(-3)
A 		1.4
(-2.8)
A 		15
avr 6.3
(1.3) 		7.9
(3) 		4.5
(-0.5) 		2.2
(-2.9) 		2.1
(-3) 		3.3
(-1.8) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183442_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9563
Sequence Type Exemplar sequence
Representative Public ID K10D11.2 NCBI
Target Description K10D11.2 /REP_DB=WormBase Gene ID /WP=CE18883 /TR=O17945 /GB=CAB03526.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070086(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070086 NCBI Caenorhabditis elegans K10D11.2 (K10D11.2) mRNA, complete cds. 11/11 None
GENEFINDER00000011405 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12974604:12982000:1 9/11 None
K10D11.2 ENSEMBL cdna:known chromosome:CEL140:IV:12978987:12981910:1 gene:K10D11.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011396 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12978992-12981916(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K10D11.2
Entrez Gene 187267 Entrez gene
SwissProt O17945 EMBL-EBI
WormBase CE18883 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03526 Hypothetical protein K10D11.2 [Caenorhabditis elegans] ref|NP_502487.1| K10D11.2 [Caenorhabditis elegans] 0.0
blast CAB03521 Hypothetical protein K10D11.1 [Caenorhabditis elegans] ref|NP_502486.2| Downstream Of DAF-16 (regulated by DAF-16) family member (dod-17) [Caenorhabditis elegans] 0.0
blast CAB03526 Hypothetical protein K10D11.2 [Caenorhabditis elegans] ref|NP_502487.1| K10D11.2 [Caenorhabditis elegans] 1.0E-164
blast CAB05216 Hypothetical protein F55G11.5 [Caenorhabditis elegans] ref|NP_502482.1| Downstream Of DAF-16 (regulated by DAF-16) family member (dod-22) [Caenorhabditis elegans] 1.0E-141
blast CAB05220 Hypothetical protein F55G11.8 [Caenorhabditis elegans] ref|NP_502481.1| F55G11.8 [Caenorhabditis elegans] 1.0E-130
blast CAB05139 Hypothetical protein C32H11.13 [Caenorhabditis elegans] ref|NP_502475.1| C32H11.13 [Caenorhabditis elegans] 1.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 1.3E-48
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 7.1E-49
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.1E-47
Sequence
Target Sequence 
>C. ELEGANS:183442_AT
tgaacgagctacagtccttaacgccacagaaacaactttcaccaaatcaattttcgatag
tgttgggctatctttgctttcgttcccacaagaccccactaactatttctcattgagaag
ctcgcttgtttttgaaggaagctctttcaatcagggcaaatatgttggaaatcttttcca
aatgtatcaaaccaaaaagcagtggttctcaaaaactggctccataattgttgtaaacct
tgctgcaagtggtaatagtgacaagctcctgattcagaaatcaatttacgtccaagacat
ttctcaatttgtggagctgtacccggaaatcaacacttcctacactgaaactatcaacgg
cggaaatcttaaatcttctctcgtttccgtgtcaggtgccaacttcaaattgacaaaagt
tgtcatgaatgacggagcaacattatccgtttactatggttctccaactgacatgacact
tgtgaagacctacactggcctggaaatcaacaaagccgtacctctgaacttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAACGAGCTACAGTCCTTAACGCC 522 573 438 Antisense
TAGTGTTGGGCTATCTTTGCTTTCG 616 653 495 Antisense
AAGACCCCACTAACTATTTCTCATT 47 153 527 Antisense
GGAAGCTCTTTCAATCAGGGCAAAT 416 531 574 Antisense
GGAGCTGTACCCGGAAATCAACACT 382 519 750 Antisense
AATCAACACTTCCTACACTGAAACT 456 171 765 Antisense
GGAAATCTTAAATCTTCTCTCGTTT 388 527 799 Antisense
TTCCGTGTCAGGTGCCAACTTCAAA 198 699 822 Antisense
TGGTTCTCCAACTGACATGACACTT 500 551 894 Antisense
GAAGACCTACACTGGCCTGGAAATC 555 337 921 Antisense
CAACAAAGCCGTACCTCTGAACTTC 440 189 945 Antisense
Sequence Source Affymetrix Proprietary Database