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[183441_at]

Description C54F6.5 /REP_DB=WormBase Gene ID /WP=CE08977 /TR=O16447 /GB=AAG24010.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 88      6grp_total > 88      4grp_total > 02      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3410
1 2 3 4 range
A 11.4
(-3)
A 		40.6
(-2.9)
A 		45.2
(-2.9)
A 		2807.4
(3)
P 		2796
B 35.6
(-3)
A 		42.7
(-2.9)
A 		12.1
(-3)
A 		3421.6
(3)
P 		3410
C 84.8
(-2.9)
M 		24.8
(-3)
A 		11.5
(-3)
A 		3333.4
(3)
P 		3322
avr 43.9
(-3) 		36
(-3) 		22.9
(-3) 		3187.5
(3) 		3165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1388
1 2 3 4 5 6 range
A 86.6
(-2.7)
P 		37.5
(-3)
A 		69.7
(-2.8)
P 		208.6
(-2.1)
P 		604.3
(0)
P 		1167.4
(3)
P 		1130
B 113.9
(-2.6)
P 		101
(-2.7)
P 		40.4
(-3)
A 		157.6
(-2.4)
P 		764.2
(0.5)
P 		1277.2
(3)
P 		1237
C 112.1
(-2.6)
P 		48.4
(-2.9)
A 		21.8
(-3)
A 		197.4
(-2.2)
P 		752.6
(0.2)
P 		1409.3
(3)
P 		1388
avr 104.2
(-2.7) 		62.3
(-2.9) 		44
(-3) 		187.9
(-2.3) 		707
(0.2) 		1284.6
(3) 		1241
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 726
1 2 3 4 range
A 4.2
(-3)
A 		8.8
(-2.9)
A 		11.8
(-2.9)
A 		411
(3)
P 		407
B 11.3
(-2.9)
A 		10.6
(-2.9)
A 		2.8
(-3)
A 		729.2
(3)
P 		726
C 28.1
(-2.7)
M 		7.1
(-3)
A 		4
(-3)
A 		562.1
(3)
P 		558
avr 14.5
(-2.9) 		8.8
(-3) 		6.2
(-3) 		567.4
(3) 		561

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 471
1 2 3 4 5 6 range
A 16
(-2.9)
P 		13.3
(-3)
A 		15.2
(-3)
P 		52.9
(-2.1)
P 		182.4
(0.7)
P 		284.2
(3)
P 		271
B 39.6
(-2.6)
P 		33.6
(-2.7)
P 		9.8
(-3)
A 		41.7
(-2.6)
P 		310.5
(0.9)
P 		476.3
(3)
P 		467
C 41.6
(-2.5)
P 		14.8
(-2.9)
A 		5.6
(-3)
A 		39.7
(-2.6)
P 		243.5
(0.1)
P 		471.8
(3)
P 		466
avr 32.4
(-2.7) 		20.6
(-2.8) 		10.2
(-3) 		44.8
(-2.5) 		245.5
(0.5) 		410.8
(3) 		401
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183441_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11600
Sequence Type Exemplar sequence
Representative Public ID C54F6.5 NCBI
Target Description C54F6.5 /REP_DB=WormBase Gene ID /WP=CE08977 /TR=O16447 /GB=AAG24010.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072537(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072537 NCBI Caenorhabditis elegans C54F6.5 (C54F6.5) mRNA, complete cds. 11/11 None
C54F6.5 ENSEMBL cdna:known chromosome:CEL140:V:7530047:7532004:1 gene:C54F6.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000031633 3/11 Cross Hyb Matching Probes None
GENEFINDER00000031635 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7530047-7532005(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C54F6.5
Entrez Gene 179137 Entrez gene
SwissProt O16447 EMBL-EBI
WormBase CE08977 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504938 C54F6.5 [Caenorhabditis elegans] gb|AAG24010.1| Hypothetical protein C54F6.5 [Caenorhabditis elegans] 2.0E-84
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504938.1 1 141-163
C54F6.5 1 141-163
Sequence
Target Sequence 
>C. ELEGANS:183441_AT
ggttttcctcgttgctattaaatctgaagatttgggatcggatgccaaagaaaatgacat
agaatgtgtactttcatgtgaagtcgacaaagttgaagattgggaaaagtgtgcggaggg
atgctattcgggaaaaatgggcaagttttactttataatatatgattcggatcgtacttt
cgtatcctgtggaaccaattgcattaataagtttttcaagcccaatacagatgtggcaga
tttgcaggagtttgaaaattgtgccgagaactttacaacttttttccacacttgctgttt
tgattttcaagtgatcaacggtgttcagaaaattgttttgtttttttttaatcttgattg
tactgaaatgttcaccaagaccctcctcctccttatcctcatcgccttcctggccgagct
tgccaccgctgatttttcgtgtttccttggaaattggttctgtgatagcgtgacgtgtag
aaactgcaaaatctcatcgtgcctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTTTCCTCGTTGCTATTAAATCT 157 495 42 Antisense
GTGTGCGGAGGGATGCTATTCGGGA 455 487 150 Antisense
ATATGATTCGGATCGTACTTTCGTA 537 21 201 Antisense
TCGTACTTTCGTATCCTGTGGAACC 693 599 213 Antisense
AATAAGTTTTTCAAGCCCAATACAG 30 173 247 Antisense
TACAACTTTTTTCCACACTTGCTGT 167 643 315 Antisense
TCCACACTTGCTGTTTTGATTTTCA 217 589 326 Antisense
ACTGAAATGTTCACCAAGACCCTCC 413 97 403 Antisense
CACCGCTGATTTTTCGTGTTTCCTT 416 201 465 Antisense
ATTGGTTCTGTGATAGCGTGACGTG 628 3 494 Antisense
AACTGCAAAATCTCATCGTGCCTCA 300 143 523 Antisense
Sequence Source Affymetrix Proprietary Database