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[183440_s_at]

Description R09A1.3 /REP_DB=WormBase Gene ID /WP=CE18129 /TR=O61933 /GB=AAC17777.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 0      4grp_high_8_8 > 54      6grp_highest_nonorm > 90      6grp_total > 03      4grp_total > 57      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 295
1 2 3 4 range
A 141.7
(-1.8)
P 		275.5
(1.8)
P 		319.8
(3)
P 		98.4
(-3)
P 		221
B 144
(-1.4)
P 		273.7
(1.3)
P 		359.2
(3)
P 		64.3
(-3)
A 		295
C 144.5
(-3)
P 		289.3
(3)
P 		285.3
(2.8)
P 		146
(-2.9)
P 		145
avr 143.4
(-1.9) 		279.5
(1.8) 		321.4
(3) 		102.9
(-3) 		219

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 188.8
(3)
P 		177
(2.2)
P 		108.8
(-2.8)
P 		167.2
(1.4)
P 		105.5
(-3)
P 		112
(-2.5)
P 		83
B 154.3
(2.4)
P 		157.2
(2.6)
P 		100.5
(-2.3)
P 		161.3
(3)
P 		139.5
(1.1)
P 		93
(-3)
P 		68
C 186.2
(2.8)
P 		152.9
(0.7)
P 		131.7
(-0.6)
P 		189.6
(3)
P 		105.9
(-2.2)
P 		93.6
(-3)
P 		96
avr 176.4
(3) 		162.4
(1.9) 		113.7
(-1.9) 		172.7
(2.7) 		117
(-1.6) 		99.5
(-3) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 51.6
(0.2)
P 		59.8
(0.9)
P 		83.6
(3)
P 		14.4
(-3)
P 		69
B 45.9
(-0.2)
P 		67.6
(1.7)
P 		83.2
(3)
P 		13.7
(-3)
A 		70
C 47.8
(-1.1)
P 		83.2
(1.7)
P 		99.4
(3)
P 		24.6
(-3)
P 		75
avr 48.4
(-0.4) 		70.2
(1.4) 		88.7
(3) 		17.6
(-3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 34.8
(-1.3)
P 		62.9
(3)
P 		23.7
(-3)
P 		42.4
(-0.1)
P 		31.8
(-1.8)
P 		27.3
(-2.4)
P 		39
B 53.7
(2.4)
P 		52.3
(2.2)
P 		24.4
(-3)
P 		42.7
(0.4)
P 		56.7
(3)
P 		34.7
(-1.1)
P 		32
C 69
(3)
P 		46.7
(-0.5)
P 		33.5
(-2.6)
P 		38.1
(-1.9)
P 		34.3
(-2.5)
P 		31.3
(-3)
P 		38
avr 52.5
(2.7) 		54
(3) 		27.2
(-3) 		41.1
(0.1) 		40.9
(0.1) 		31.1
(-2.1) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183440_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14913
Sequence Type Exemplar sequence
Representative Public ID R09A1.3 NCBI
Target Description R09A1.3 /REP_DB=WormBase Gene ID /WP=CE18129 /TR=O61933 /GB=AAC17777.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070963(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070963 NCBI Caenorhabditis elegans R09A1.3 (R09A1.3) mRNA, complete cds. 11/11 None
GENEFINDER00000044512 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1018389:1029652:-1 11/11 None
R09A1.3 ENSEMBL cdna:known chromosome:CEL140:V:1023672:1026895:-1 gene:R09A1.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044510 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1023671-1026895(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R09A1.3
Entrez Gene 178604 Entrez gene
SwissProt O61933 EMBL-EBI
WormBase CE18129 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17776 Hypothetical protein R09A1.2 [Caenorhabditis elegans] ref|NP_503363.1| R09A1.2 [Caenorhabditis elegans] 0.0
blast AAC17777 Hypothetical protein R09A1.3 [Caenorhabditis elegans] ref|NP_503364.1| R09A1.3 [Caenorhabditis elegans] 1.0E-179
blast CAE71047 Hypothetical protein CBG17889 [Caenorhabditis briggsae] 1.0E-156
blast AAC17777 Hypothetical protein R09A1.3 [Caenorhabditis elegans] ref|NP_503364.1| R09A1.3 [Caenorhabditis elegans] 1.0E-147
blast CAE71047 Hypothetical protein CBG17889 [Caenorhabditis briggsae] 1.0E-137
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 5.3E-23
Sequence
Target Sequence 
>C. ELEGANS:183440_S_AT
tttggccacctatcaacatgtcatggattgtgtgattgagatcaatcatatttctatgca
ccgtgacctaaacatcccgccagatgagcacacgatgctccgatctgtggtctacgaaat
ggcattgttggcaagaatcatcgaggaggttgccaatcaagcatccggggagaaatcgag
aagccgatcaaattcctttcagagattgacaatttcagcgccgtcccttcataccacaac
cgaaggcgacgagactcgagatattggatcaggtgaaaatattccagcagtggatgttgg
gtcattaaaggataacattacaaaagtattcgaaatggtcgaaaacatgctaaaatacat
cgataaaaagacagaacgacgttggtggctccgagatgtcataaatttcactcaagccgc
tgtcaaagtcgccttattcataagtgctgcgatttcagtggcttatcacgaaaatcaaat
tgcgccgattattacgttggtgattactgtaattcagggaataaccgaaggattcgatca
gtactttctcaagaacaagagcccagatgacatccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGGCCACCTATCAACATGTCATG 324 665 348 Antisense
GACCTAAACATCCCGCCAGATGAGC 438 383 412 Antisense
TGAGCACACGATGCTCCGATCTGTG 546 567 432 Antisense
GGAGGTTGCCAATCAAGCATCCGGG 95 517 492 Antisense
GAGATTGACAATTTCAGCGCCGTCC 234 397 549 Antisense
GACGTTGGTGGCTCCGAGATGTCAT 660 375 725 Antisense
CACTCAAGCCGCTGTCAAAGTCGCC 521 191 756 Antisense
AGTGCTGCGATTTCAGTGGCTTATC 246 61 790 Antisense
AATTGCGCCGATTATTACGTTGGTG 52 177 825 Antisense
GGATTCGATCAGTACTTTCTCAAGA 333 509 877 Antisense
GAACAAGAGCCCAGATGACATCCAT 182 353 900 Antisense
Sequence Source Affymetrix Proprietary Database