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[183439_at]

Description F11A5.11 /REP_DB=WormBase Gene ID /WP=CE15789 /TR=O17794 /GB=CAB07362.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 17      6grp_cgc > 56      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 18.5
(-3)
A 		57.4
(-1.1)
A 		85.5
(0.3)
A 		141.6
(3)
A 		123
B 12.5
(-3)
A 		57.2
(-1)
A 		31.1
(-2.2)
A 		149.5
(3)
P 		137
C 9.2
(-3)
A 		32.9
(-1.6)
A 		37.4
(-1.3)
A 		109.3
(3)
P 		100
avr 13.4
(-3) 		49.2
(-1.2) 		51.3
(-1.1) 		133.5
(3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 13.1
(-2.2)
A 		8.8
(-2.9)
A 		48.6
(3)
A 		18.3
(-1.5)
A 		7.8
(-3)
A 		44.7
(2.4)
A 		41
B 19
(-1.8)
A 		33.9
(0.1)
A 		36.7
(0.5)
A 		10.2
(-3)
A 		55.8
(3)
A 		53.2
(2.7)
A 		46
C 7.5
(-3)
A 		37.4
(3)
A 		12.4
(-2)
A 		15.7
(-1.4)
A 		9.6
(-2.6)
A 		35.9
(2.7)
A 		30
avr 13.2
(-3) 		26.7
(-0.4) 		32.6
(0.7) 		14.7
(-2.7) 		24.4
(-0.9) 		44.6
(3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 6.7
(-3)
A 		12.5
(-0.8)
A 		22.4
(3)
A 		20.7
(2.4)
A 		16
B 4
(-3)
A 		14.1
(-0.8)
A 		7.2
(-2.3)
A 		31.9
(3)
P 		28
C 3
(-3)
A 		9.5
(-0.5)
A 		13
(0.9)
A 		18.4
(3)
P 		15
avr 4.6
(-3) 		12
(-0.7) 		14.2
(0) 		23.7
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 2.4
(-3)
A 		3.1
(-2.5)
A 		10.6
(2.8)
A 		4.6
(-1.4)
A 		2.4
(-3)
A 		10.9
(3)
A 		9
B 6.6
(-1.8)
A 		11.3
(-0.4)
A 		8.9
(-1.1)
A 		2.7
(-3)
A 		22.7
(3)
A 		19.8
(2.1)
A 		20
C 2.8
(-3)
A 		11.4
(2.6)
A 		3.1
(-2.8)
A 		3.2
(-2.7)
A 		3.1
(-2.8)
A 		12
(3)
A 		9
avr 3.9
(-2.8) 		8.6
(-0.1) 		7.5
(-0.8) 		3.5
(-3) 		9.4
(0.3) 		14.2
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183439_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12536
Sequence Type Exemplar sequence
Representative Public ID F11A5.11 NCBI
Target Description F11A5.11 /REP_DB=WormBase Gene ID /WP=CE15789 /TR=O17794 /GB=CAB07362.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F11A5.11 ENSEMBL cdna:pseudogene chromosome:CEL140:V:16224906:16225998:1 gene:F11A5.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16224905-16225998(+) 100.0 100.0
Public Domain and Genome References
Ensembl F11A5.11
Sequence
Target Sequence 
>C. ELEGANS:183439_AT
taatgcaaccgttctcatttttccccataaaagctgtggcatgtaatggggttttagtga
atctttctataccattgagtaattatggattttcttctcaaacagatgttgatagaaaat
ctcaaatggactatgttaaaaagaactttcccgagtactatgaacattttctaaatcttc
acaatttttcaatatacgatataaatgcttggtctacgcttgcagtcatatcttgttcta
tgggaactttattttcaggctttatatttattttctctactttagatatgctcaaaatgc
tcaaaggccttaaaataaagatttctgcaaagagtttcaatcgttatcaaaatgctgtga
aaagtcttttggctcaattttgcacttcgtcgatttgcttggcacctccagttgcaatga
taataataatgattggaaatttggaaaatggtcagctttttgttcatattgctgtgggga
ttggtgctctgcattcttcggtcaatgggattgtgctcatcgttacaactattccatacc
gacaatttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATGCAACCGTTCTCATTTTTCCC 636 635 203 Antisense
GAACTTTCCCGAGTACTATGAACAT 184 349 345 Antisense
AAATGCTTGGTCTACGCTTGCAGTC 394 119 405 Antisense
ACGCTTGCAGTCATATCTTGTTCTA 61 93 418 Antisense
GTCTTTTGGCTCAATTTTGCACTTC 702 467 566 Antisense
TGCACTTCGTCGATTTGCTTGGCAC 513 577 583 Antisense
ATGGTCAGCTTTTTGTTCATATTGC 392 51 650 Antisense
ATTGCTGTGGGGATTGGTGCTCTGC 125 7 670 Antisense
GCTCTGCATTCTTCGGTCAATGGGA 628 299 688 Antisense
GGGATTGTGCTCATCGTTACAACTA 688 495 709 Antisense
ACAACTATTCCATACCGACAATTTG 102 113 727 Antisense
Sequence Source Affymetrix Proprietary Database