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[183437_at]

Description F02C9.1 /REP_DB=WormBase Gene ID /WP=CE09173 /TR=P91206 /GB=AAB37359.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 43      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 9.3
(-3)
A 		68.3
(3)
A 		9.3
(-3)
A 		18.4
(-2.1)
A 		59
B 23.1
(0.2)
A 		28.2
(1)
A 		40.2
(3)
A 		3.4
(-3)
A 		37
C 5.5
(-3)
A 		64.4
(3)
A 		9.3
(-2.6)
A 		21.9
(-1.3)
A 		59
avr 12.6
(-3) 		53.6
(3) 		19.6
(-2) 		14.6
(-2.7) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 9.4
(-2.4)
A 		6.5
(-2.8)
A 		4.5
(-3)
A 		8.2
(-2.6)
A 		28.9
(-0.1)
A 		54.7
(3)
A 		50
B 9.6
(-2.3)
A 		34.8
(-0.1)
A 		2.2
(-3)
A 		7.9
(-2.5)
A 		70.2
(3)
P 		37.6
(0.1)
A 		68
C 43.2
(-0.2)
A 		17.9
(-3)
A 		27.8
(-1.9)
A 		20
(-2.8)
A 		41.7
(-0.3)
A 		71.4
(3)
A 		54
avr 20.7
(-1.7) 		19.7
(-1.9) 		11.5
(-3) 		12
(-2.9) 		46.9
(1.9) 		54.6
(3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 3.4
(-2.5)
A 		14.8
(3)
A 		2.4
(-3)
A 		2.7
(-2.9)
A 		12
B 7.4
(1.7)
A 		7
(1.4)
A 		9.3
(3)
A 		0.7
(-3)
A 		9
C 1.8
(-3)
A 		18.5
(3)
A 		3.2
(-2.5)
A 		3.7
(-2.3)
A 		17
avr 4.2
(-2) 		13.4
(3) 		5
(-1.6) 		2.4
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 1.7
(-2.7)
A 		2.3
(-2.4)
A 		1
(-3)
A 		2.1
(-2.5)
A 		8.7
(0.8)
A 		13.3
(3)
A 		12
B 3.3
(-2.4)
A 		11.6
(-0.6)
A 		0.5
(-3)
A 		2.1
(-2.7)
A 		28.5
(3)
P 		14
(-0.1)
A 		28
C 16
(0.6)
A 		5.5
(-2.5)
A 		7.1
(-2.1)
A 		4
(-3)
A 		13.5
(-0.1)
A 		23.9
(3)
A 		20
avr 7
(-1.2) 		6.5
(-1.4) 		2.9
(-2.9) 		2.7
(-3) 		16.9
(2.9) 		17.1
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183437_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14834
Sequence Type Exemplar sequence
Representative Public ID F02C9.1 NCBI
Target Description F02C9.1 /REP_DB=WormBase Gene ID /WP=CE09173 /TR=P91206 /GB=AAB37359.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071460(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071460 NCBI Caenorhabditis elegans F02C9.1 (F02C9.1) mRNA, complete cds. 11/11 None
F02C9.1 ENSEMBL cdna:known chromosome:CEL140:V:3138575:3138917:1 gene:F02C9.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040784 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3138574-3138917(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F02C9.1
Entrez Gene 184073 Entrez gene
SwissProt P91206 EMBL-EBI
WormBase CE09173 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37359 Hypothetical protein F02C9.1 [Caenorhabditis elegans] ref|NP_503861.1| F02C9.1 [Caenorhabditis elegans] 1.0E-28
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503861.1 1 7-29
F02C9.1 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:183437_AT
gttttctgctgtattatcttgttggtactcctataataatctggaccgcaacgctcattc
tcgcaatcatccgtatctggaacaaaaatcatcgagatttggcggaggagaggaagaagc
tggaggagcggatgagaccaccaaattctggattcaaggagagacgagtggtcaagagaa
gacggccgagggagacttcaaagccatcggatgaaactgctgctcgtgctggatctgttc
agccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTCTGCTGTATTATCTTGTTGG 150 449 29 Antisense
GTATTATCTTGTTGGTACTCCTATA 301 453 39 Antisense
TTGTTGGTACTCCTATAATAATCTG 137 695 47 Antisense
TAATAATCTGGACCGCAACGCTCAT 633 635 62 Antisense
TTCTCGCAATCATCCGTATCTGGAA 93 693 86 Antisense
AATCATCGAGATTTGGCGGAGGAGA 5 169 115 Antisense
AGGAGCGGATGAGACCACCAAATTC 473 55 152 Antisense
GAGTGGTCAAGAGAAGACGGCCGAG 342 401 194 Antisense
AGACGGCCGAGGGAGACTTCAAAGC 365 71 208 Antisense
CATCGGATGAAACTGCTGCTCGTGC 78 213 233 Antisense
TGCTCGTGCTGGATCTGTTCAGCCC 492 581 249 Antisense
Sequence Source Affymetrix Proprietary Database