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[183435_at]

Description F46B3.14 /REP_DB=WormBase Gene ID /WP=CE18693 /TR=Q9XV22 /GB=CAB04397.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 45      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 5.9
(-3)
A 		14.8
(-0.5)
A 		13.2
(-1)
A 		27.6
(3)
A 		22
B 41
(3)
A 		21.9
(-0.5)
A 		26.4
(0.4)
A 		7.9
(-3)
A 		33
C 8.3
(-3)
A 		15
(3)
A 		10
(-1.5)
A 		13
(1.2)
A 		7
avr 18.4
(3) 		17.2
(-0.3) 		16.5
(-2.2) 		16.2
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 20
(3)
A 		13.6
(-0.3)
A 		10.8
(-1.7)
A 		12.4
(-0.9)
A 		8.3
(-3)
A 		12
(-1.1)
A 		12
B 4.9
(-2.7)
A 		11
(-0.6)
A 		10.1
(-1)
A 		21.7
(3)
A 		4.5
(-2.9)
A 		4.1
(-3)
A 		18
C 13.6
(0.8)
A 		19
(3)
A 		6.2
(-2.2)
A 		7.7
(-1.6)
A 		4.1
(-3)
A 		7.4
(-1.7)
A 		15
avr 12.8
(1.9) 		14.5
(3) 		9
(-0.7) 		13.9
(2.6) 		5.6
(-3) 		7.8
(-1.5) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.2
(-3)
A 		3.2
(0.3)
A 		3.5
(1.3)
A 		4
(3)
A 		2
B 13.1
(3)
A 		5.4
(-1.1)
A 		6.1
(-0.7)
A 		1.7
(-3)
A 		11
C 2.7
(-1.6)
A 		4.3
(3)
A 		3.5
(0.7)
A 		2.2
(-3)
A 		2
avr 6
(3) 		4.3
(-0) 		4.4
(0.2) 		2.6
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 3.7
(0.4)
A 		4.8
(3)
A 		2.3
(-3)
A 		3.1
(-1.1)
A 		2.5
(-2.5)
A 		2.9
(-1.6)
A 		3
B 1.7
(-2.7)
A 		3.7
(0.1)
A 		2.5
(-1.6)
A 		5.8
(3)
A 		1.8
(-2.6)
A 		1.5
(-3)
A 		4
C 5
(1.9)
A 		5.8
(3)
A 		1.6
(-2.6)
A 		1.5
(-2.7)
A 		1.3
(-3)
A 		2.5
(-1.4)
A 		5
avr 3.5
(0.3) 		4.8
(3) 		2.1
(-2.6) 		3.5
(0.3) 		1.9
(-3) 		2.3
(-2.2) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183435_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12527
Sequence Type Exemplar sequence
Representative Public ID F46B3.14 NCBI
Target Description F46B3.14 /REP_DB=WormBase Gene ID /WP=CE18693 /TR=Q9XV22 /GB=CAB04397.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075582(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075582 NCBI Caenorhabditis elegans F46B3.14 (F46B3.14) mRNA, complete cds. 11/11 None
GENEFINDER00000039769 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20621681:20629380:-1 11/11 None
F46B3.14 ENSEMBL cdna:known chromosome:CEL140:V:20628732:20631423:-1 gene:F46B3.14 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039766 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20628731-20629450(-) 95.67 95.67
Public Domain and Genome References
Gene Title
Ensembl F46B3.14
Entrez Gene 185836 Entrez gene
SwissProt Q9XV22 EMBL-EBI
WormBase CE18693 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04398 Hypothetical protein F46B3.9 [Caenorhabditis elegans] ref|NP_507980.1| F46B3.9 [Caenorhabditis elegans] 1.0E-160
blast CAB04397 Hypothetical protein F46B3.14 [Caenorhabditis elegans] ref|NP_507983.1| F46B3.14 [Caenorhabditis elegans] 1.0E-103
blast CAB04397 Hypothetical protein F46B3.14 [Caenorhabditis elegans] ref|NP_507983.1| F46B3.14 [Caenorhabditis elegans] 6.0E-77
blast AAF61272 spore coat protein sp45 [Polysphondylium pallidum] 2.0E-24
blast CAB04398 Hypothetical protein F46B3.9 [Caenorhabditis elegans] ref|NP_507980.1| F46B3.9 [Caenorhabditis elegans] 2.0E-19
Sequence
Target Sequence 
>C. ELEGANS:183435_AT
tgtcttctacttgctgggggcatcagtgctcgtgtcgctccgattgaatctatcgtcggt
cccggagccccatgcatcggtgaagaatgtggtgataatttatcaaatccctgcagtctt
ataaaatgcagtaacggatctcactgcgttcctcggggtactaccggaagatgtgttcta
gattctaacccgtgcgcatcaatcaagtgtggtcgcggatatcattgcgctgtggaaaat
ggacaaggaggatgtgttccgagtaacattccctgttcacctgccatcaaaatgtttgtt
tcagatgtcccttccgaagtcgatctctgtagccttgtgaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCTTCTACTTGCTGGGGGCATCA 133 559 121 Antisense
CTCGTGTCGCTCCGATTGAATCTAT 362 231 149 Antisense
GAGCCCCATGCATCGGTGAAGAATG 515 385 185 Antisense
AATTTATCAAATCCCTGCAGTCTTA 198 175 217 Antisense
CAGTAACGGATCTCACTGCGTTCCT 40 189 249 Antisense
TAACCCGTGCGCATCAATCAAGTGT 681 637 306 Antisense
GTGGTCGCGGATATCATTGCGCTGT 462 489 329 Antisense
TGTTCCGAGTAACATTCCCTGTTCA 708 559 375 Antisense
AATGTTTGTTTCAGATGTCCCTTCC 36 165 411 Antisense
CAGATGTCCCTTCCGAAGTCGATCT 3 201 422 Antisense
GTCGATCTCTGTAGCCTTGTGAAAT 365 473 439 Antisense
Sequence Source Affymetrix Proprietary Database