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[183434_at]

Description Y39B6B.Y /REP_DB=WormBase Gene ID /WP=CE21700 /TR=Q9NET5 /GB=CAB60930.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 41      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 57.5
(-3)
A 		79.9
(1.2)
P 		89.8
(3)
P 		87.3
(2.5)
A 		32
B 48.4
(-3)
A 		110.6
(3)
P 		102.9
(2.3)
P 		48.8
(-3)
A 		62
C 33.6
(-3)
A 		94.7
(2.5)
P 		65.9
(-0.1)
P 		100.5
(3)
P 		67
avr 46.5
(-3) 		95.1
(3) 		86.2
(1.9) 		78.9
(1) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 113.4
(3)
P 		85.8
(1.1)
P 		70.7
(0.1)
P 		59.1
(-0.7)
P 		32
(-2.6)
A 		26.2
(-3)
A 		87
B 67.5
(1.6)
M 		76.4
(2.5)
P 		81.5
(3)
P 		68.9
(1.8)
A 		49.6
(-0.1)
A 		20.5
(-3)
A 		61
C 77.1
(0.7)
P 		104.1
(3)
P 		74.7
(0.6)
P 		82.3
(1.2)
M 		53.8
(-1.2)
A 		32.1
(-3)
A 		72
avr 86
(2.7) 		88.8
(3) 		75.6
(1.7) 		70.1
(1.2) 		45.1
(-1.2) 		26.3
(-3) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 20.9
(1.5)
A 		17.4
(-0.4)
P 		23.5
(3)
P 		12.8
(-3)
A 		11
B 15.4
(-1.2)
A 		27.3
(3)
P 		23.8
(1.8)
P 		10.4
(-3)
A 		17
C 11.1
(-3)
A 		27.2
(3)
P 		23
(1.4)
P 		16.9
(-0.8)
P 		16
avr 15.8
(-1.6) 		24
(3) 		23.4
(2.7) 		13.4
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 20.9
(0.6)
P 		30.5
(3)
P 		15.4
(-0.8)
P 		15
(-0.9)
P 		9.7
(-2.2)
A 		6.4
(-3)
A 		24
B 23.5
(2.4)
M 		25.4
(3)
P 		19.8
(1.1)
P 		18.2
(0.6)
A 		20.1
(1.2)
A 		7.6
(-3)
A 		18
C 28.6
(2.1)
P 		31.8
(3)
P 		19
(-0.7)
P 		16.5
(-1.4)
M 		17.4
(-1.1)
A 		10.8
(-3)
A 		21
avr 24.3
(1.6) 		29.2
(3) 		18.1
(-0.2) 		16.6
(-0.6) 		15.7
(-0.9) 		8.3
(-3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183434_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19443
Sequence Type Exemplar sequence
Representative Public ID Y39B6B.Y NCBI
Target Description Y39B6B.Y /REP_DB=WormBase Gene ID /WP=CE21700 /TR=Q9NET5 /GB=CAB60930.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171600(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171600 NCBI Caenorhabditis elegans Y39B6A.8 (Y39B6A.8) mRNA, complete cds. 11/11 None
SNAP00000030554 ENSEMBL cdna:SNAP chromosome:CEL140:V:19143595:19150869:1 11/11 None
GENEFINDER00000030719 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19143533:19148111:1 11/11 None
Y39B6A.8 ENSEMBL cdna:known chromosome:CEL140:V:19143461:19148115:1 gene:Y39B6A.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19143532-19148115(+) 99.92 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39B6A.8
Entrez Gene 180259 Entrez gene
SwissProt Q8MYP4 EMBL-EBI
WormBase CE29882 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD31810 Hypothetical protein Y39B6A.8 [Caenorhabditis elegans] ref|NP_741690.1| Y39B6A.8 [Caenorhabditis elegans] 0.0
blast T45051 hypothetical protein Y39B6B.y [imported] - Caenorhabditis elegans 0.0
blast CAB07308 B0413.4 [Caenorhabditis elegans] 0.0
blast CAB07308 B0413.4 [Caenorhabditis elegans] 1.0E-175
blast CAD31810 Hypothetical protein Y39B6A.8 [Caenorhabditis elegans] ref|NP_741690.1| Y39B6A.8 [Caenorhabditis elegans] 1.0E-139
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741690.1 1 30-52
Y39B6A.8 1 30-52
GENEFINDER00000030719 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:183434_AT
ccaactgatccccaaattgccattgatgacgtcatccaggagtccaaacatattaggggc
cgcccattcgctattgagcccccaaccgacttggtacacgtgatccatgtgaaatctgac
agattcccggcgaaaaatctagaaaaatcgatatacactcaagaaatccaagaaaaatct
gaaaacttggcagaaattgatgaaaatctacttttaacgagtacgatggaggatggagct
actgtacctacagtaacctcgaatattttggaaattttggaggatgcattggaagagggc
tccgggagtttagaatcattagaaaaatctggaaattctggagaaaaactcgaggaaaac
aggaaaaatcggagaaaaagcgtaaaatcattggagcacagctttgagcagttttatcaa
aggaataaggaatctgtaagctgctcagcaaccgcatatcgtctcttgtgctcttccggt
gcttcatcccaatttgtgtatcgatgggaaaaagtgggcggggtctgccaaagtttccca
tatggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAACTGATCCCCAAATTGCCATTG 328 277 649 Antisense
GATGACGTCATCCAGGAGTCCAAAC 558 411 673 Antisense
CATATTAGGGGCCGCCCATTCGCTA 320 179 697 Antisense
AACCGACTTGGTACACGTGATCCAT 211 147 732 Antisense
ATCTGACAGATTCCCGGCGAAAAAT 531 33 762 Antisense
GGAGGATGGAGCTACTGTACCTACA 143 515 876 Antisense
GGGCTCCGGGAGTTTAGAATCATTA 88 491 945 Antisense
GGAGCACAGCTTTGAGCAGTTTTAT 132 521 1041 Antisense
TAAGCTGCTCAGCAACCGCATATCG 80 639 1085 Antisense
GGTGCTTCATCCCAATTTGTGTATC 29 501 1126 Antisense
GGTCTGCCAAAGTTTCCCATATGGG 218 499 1170 Antisense
Sequence Source Affymetrix Proprietary Database