[Home] | [Total List]

[183433_at]

Description M03F8.4 /REP_DB=WormBase Gene ID /WP=CE12378 /TR=O16374 /GB=AAB65911.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 42      4grp_high_8_8 > 63      6grp_total > 21      4grp_total > 48      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 69.1
(3)
P 		56.9
(-2.2)
P 		65.5
(1.5)
P 		54.9
(-3)
P 		14
B 52.8
(-3)
P 		54.3
(-2.7)
P 		85.6
(3)
P 		58.7
(-1.9)
P 		33
C 58.9
(-1.8)
P 		54.9
(-2.3)
M 		98.2
(3)
P 		48.8
(-3)
P 		49
avr 60.3
(-1.7) 		55.4
(-2.7) 		83.1
(3) 		54.1
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 63.7
(-1.3)
P 		115.5
(3)
P 		106.1
(2.2)
P 		85.2
(0.5)
P 		60.4
(-1.5)
P 		42.8
(-3)
P 		73
B 75.7
(-2.6)
P 		100.5
(0.2)
P 		125.2
(3)
P 		101
(0.2)
P 		72.6
(-3)
P 		77.9
(-2.4)
P 		53
C 90.1
(1.1)
P 		113.5
(3)
P 		107.6
(2.5)
P 		50.5
(-2.2)
M 		86.9
(0.8)
P 		40.4
(-3)
P 		73
avr 76.5
(-0.7) 		109.8
(2.7) 		113
(3) 		78.9
(-0.5) 		73.3
(-1) 		53.7
(-3) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 25.2
(3)
P 		12.3
(-1.5)
P 		17.1
(0.2)
P 		8
(-3)
P 		17
B 16.8
(0.5)
P 		13.4
(-2.3)
P 		19.8
(3)
P 		12.5
(-3)
P 		7
C 19.5
(-0.4)
P 		15.8
(-1.2)
M 		34.2
(3)
P 		8.2
(-3)
P 		26
avr 20.5
(1.6) 		13.8
(-1.2) 		23.7
(3) 		9.6
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 11.7
(-2.7)
P 		41.1
(3)
P 		23.1
(-0.5)
P 		21.6
(-0.8)
P 		18.2
(-1.5)
P 		10.4
(-3)
P 		31
B 26.3
(-3)
P 		33.5
(3)
P 		30.4
(0.4)
P 		26.8
(-2.6)
P 		29.5
(-0.3)
P 		29
(-0.8)
P 		7
C 33.4
(2.7)
P 		34.6
(3)
P 		27.4
(1.2)
P 		10.1
(-3)
M 		28.1
(1.4)
P 		13.5
(-2.2)
P 		25
avr 23.8
(-1) 		36.4
(3) 		27
(0) 		19.5
(-2.4) 		25.3
(-0.5) 		17.6
(-3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183433_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11827
Sequence Type Exemplar sequence
Representative Public ID M03F8.4 NCBI
Target Description M03F8.4 /REP_DB=WormBase Gene ID /WP=CE12378 /TR=O16374 /GB=AAB65911.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072144(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072144 NCBI Caenorhabditis elegans M03F8.4 (M03F8.4) mRNA, complete cds. 11/11 None
SNAP00000043835 ENSEMBL cdna:SNAP chromosome:CEL140:V:5933969:5935957:1 11/11 None
GENEFINDER00000043851 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5934120:5935953:1 11/11 None
M03F8.4 ENSEMBL cdna:known chromosome:CEL140:V:5934120:5935518:1 gene:M03F8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5934119-5935518(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M03F8.4
Entrez Gene 187430 Entrez gene
SwissProt O16374 EMBL-EBI
WormBase CE12378 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504545 M03F8.4 [Caenorhabditis elegans] gb|AAB65911.1| Hypothetical protein M03F8.4 [Caenorhabditis elegans] 1.0E-157
blast NP_504545 M03F8.4 [Caenorhabditis elegans] gb|AAB65911.1| Hypothetical protein M03F8.4 [Caenorhabditis elegans] 1.0E-156
blast CAE64542 Hypothetical protein CBG09285 [Caenorhabditis briggsae] 1.0E-153
blast CAE64542 Hypothetical protein CBG09285 [Caenorhabditis briggsae] 1.0E-132
blast CAE64542 Hypothetical protein CBG09285 [Caenorhabditis briggsae] 1.0E-106
blast XP_666051 hypothetical protein Chro.50309 [Cryptosporidium hominis] gb|EAL35820.1| hypothetical protein Chro.50309 [Cryptosporidium hominis] 9.0E-15
blast XP_666051 hypothetical protein Chro.50309 [Cryptosporidium hominis] gb|EAL35820.1| hypothetical protein Chro.50309 [Cryptosporidium hominis] 1.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 6.4E-9
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 6.4E-9
Sequence
Target Sequence 
>C. ELEGANS:183433_AT
cagtttgttgatgtgccgattcggtatagaattcaagatgagaaaataattacgccagac
gaatatgactataaaatgtcaatttgtgttccagcattgtttggaaatggatatgatgca
aagcgaattgttgagtttattgagctgaatactttgcaaggaatcgagaaaatatacatt
tacactaatcaaaaagagcttgatggatccatgaagaaaacgttgaaatactattcggat
aatcacaaaataacattaattgattacacattaccattcagagaggatggtgtttggtat
cacgggcaattggcaactgttactgattgtttactgagaaacactggaatcacaaaatac
acatttttcaatgattttgatgagttcttcgtccccgttatcaaaagtcggactctcttt
gaaacaatcagtgggctttttgaagatcccactattggatcgcaacgaacagctttgaag
tatataaatgcaaaaatcaagagcgctccgtattcactga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGTTTGTTGATGTGCCGATTCGGT 294 205 229 Antisense
GTCAATTTGTGTTCCAGCATTGTTT 620 463 306 Antisense
GATTACACATTACCATTCAGAGAGG 184 429 490 Antisense
GAGGATGGTGTTTGGTATCACGGGC 688 403 511 Antisense
GTATCACGGGCAATTGGCAACTGTT 182 453 525 Antisense
GGCAACTGTTACTGATTGTTTACTG 285 533 540 Antisense
TGATTTTGATGAGTTCTTCGTCCCC 38 565 600 Antisense
AGTCGGACTCTCTTTGAAACAATCA 260 61 634 Antisense
GGCTTTTTGAAGATCCCACTATTGG 106 537 662 Antisense
GGATCGCAACGAACAGCTTTGAAGT 295 513 685 Antisense
ATCAAGAGCGCTCCGTATTCACTGA 593 25 724 Antisense
Sequence Source Affymetrix Proprietary Database