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[183430_at]

Description Y39B6B.P /REP_DB=WormBase Gene ID /WP=CE21691 /TR=Q9NEU4 /GB=CAB60921.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 54      4grp_high_8_8 > 06      6grp_total > 45      4grp_total > 02      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 618
1 2 3 4 range
A 211.8
(-2)
P 		204.2
(-2.1)
P 		108.7
(-3)
P 		726.8
(3)
P 		618
B 244.6
(-2.5)
P 		209.8
(-3)
M 		402.6
(-0.3)
P 		635.2
(3)
P 		425
C 260.8
(-1.6)
P 		281.3
(-1.3)
P 		166.3
(-3)
P 		560.8
(3)
P 		395
avr 239.1
(-2.8) 		231.8
(-2.9) 		225.9
(-3) 		640.9
(3) 		415

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 266
1 2 3 4 5 6 range
A 265.4
(0.1)
P 		381.7
(3)
P 		255.6
(-0.2)
P 		282.5
(0.5)
P 		143
(-3)
A 		221.1
(-1)
P 		239
B 263.5
(-0.6)
P 		203.7
(-2)
P 		408.5
(3)
P 		164.2
(-3)
P 		179.5
(-2.6)
P 		331.6
(1.1)
P 		244
C 289.7
(1.5)
P 		268.3
(0.8)
P 		212.1
(-1.2)
A 		331.3
(3)
P 		160.8
(-3)
P 		236.9
(-0.3)
P 		171
avr 272.9
(2.1) 		284.6
(2.7) 		292.1
(3) 		259.3
(1.5) 		161.1
(-3) 		263.2
(1.7) 		131
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 77.1
(0.7)
P 		44.3
(-1.8)
P 		28.4
(-3)
P 		106.4
(3)
P 		78
B 78
(-1.1)
P 		51.8
(-3)
M 		93.3
(-0)
P 		135.4
(3)
P 		84
C 86.3
(1.6)
P 		80.9
(0.8)
P 		58
(-3)
P 		94.6
(3)
P 		37
avr 80.5
(-0.6) 		59
(-3) 		59.9
(-2.9) 		112.1
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 48.9
(-2.6)
P 		135.8
(3)
P 		55.7
(-2.2)
P 		71.6
(-1.2)
P 		43.1
(-3)
A 		53.8
(-2.3)
P 		93
B 91.7
(0.6)
P 		67.8
(-1.2)
P 		99.2
(1.2)
P 		43.5
(-3)
P 		72.9
(-0.8)
P 		123.6
(3)
P 		80
C 107.4
(3)
P 		81.9
(0.2)
P 		54
(-2.8)
A 		66.6
(-1.4)
P 		52
(-3)
P 		79.3
(-0)
P 		55
avr 82.7
(1.1) 		95.2
(3) 		69.6
(-0.9) 		60.6
(-2.3) 		56
(-3) 		85.6
(1.5) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183430_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19442
Sequence Type Exemplar sequence
Representative Public ID Y39B6B.P NCBI
Target Description Y39B6B.P /REP_DB=WormBase Gene ID /WP=CE21691 /TR=Q9NEU4 /GB=CAB60921.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171573(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171573 NCBI Caenorhabditis elegans Y39B6A.34 (Y39B6A.34) mRNA, complete cds. 9/11 A 
SNAP00000030531 ENSEMBL cdna:SNAP chromosome:CEL140:V:19003593:19004361:1 9/11 None
GENEFINDER00000030707 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19003593:19004361:1 11/11 None
Y39B6A.34 ENSEMBL cdna:known chromosome:CEL140:V:19003591:19004410:1 gene:Y39B6A.34 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19003592-19004361(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39B6A.34
Entrez Gene 180245 Entrez gene
SwissProt Q8MYM9 EMBL-EBI
WormBase CE29872 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1623373_AT dm
DROSGENOME1:144392_AT dm
CHICKEN:GGA.12562.1.S1_AT similar to RIKEN cDNA 2810002N01 gga
CHICKEN:GGA.12562.2.S1_A_AT similar to RIKEN cDNA 2810002N01 gga
CHICKEN:GGA.12562.2.S1_X_AT similar to RIKEN cDNA 2810002N01 gga
CHICKEN:GGA.1721.3.A1_A_AT similar to RIKEN cDNA 2810002N01 gga
HG-U133_PLUS_2:225948_AT chromosome 14 open reading frame 153 hs
HG-U133B:225948_AT chromosome 14 open reading frame 153 hs
HU35KSUBA:HUM_ALU_AT chromosome 14 open reading frame 153 hs
HU35KSUBB:HUM_ALU_AT chromosome 14 open reading frame 153 hs
HU35KSUBC:HUM_ALU_AT chromosome 14 open reading frame 153 hs
HU35KSUBD:HUM_ALU_AT chromosome 14 open reading frame 153 hs
HUGENEFL:HUM_ALU_AT chromosome 14 open reading frame 153 hs
HC-G110:HUM_ALU_AT chromosome 14 open reading frame 153 hs
HU35KSUBC:RC_AA279848_AT chromosome 14 open reading frame 153 hs
U133_X3P:HS.265317.0.A1_3P_AT chromosome 14 open reading frame 153 hs
HG-U95B:44035_AT chromosome 14 open reading frame 153 hs
U133_X3P:HS.116029.0.S1_3P_X_AT Chromosome 14 open reading frame 153 hs
HG-U133_PLUS_2:232814_X_AT Chromosome 14 open reading frame 153 hs
HG-U133B:232814_X_AT Chromosome 14 open reading frame 153 hs
HG-U95C:61780_AT Chromosome 14 open reading frame 153 hs
HU35KSUBC:RC_C21359_AT Chromosome 14 open reading frame 153 hs
MOUSE430_2:1454309_AT RIKEN cDNA 2810002N01 gene mm
MOE430B:1454309_AT RIKEN cDNA 2810002N01 gene mm
MG-U74BV2:111723_AT RIKEN cDNA 2810002N01 gene mm
MOE430B:1429248_AT RIKEN cDNA 2810002N01 gene mm
MOUSE430_2:1429248_AT RIKEN cDNA 2810002N01 gene mm
MOE430B:1440183_X_AT RIKEN cDNA 2810002N01 gene (2810002N01Rik), mRNA mm
MOUSE430_2:1440183_X_AT RIKEN cDNA 2810002N01 gene (2810002N01Rik), mRNA mm
MU19KSUBA:TC15452_AT RIKEN cDNA 2810002N01 gene (2810002N01Rik), mRNA mm
RG-U34C:RC_AI172218_AT similar to RIKEN cDNA 2810002N01 (predicted) rn
RAE230A:1372265_AT similar to RIKEN cDNA 2810002N01 (predicted) rn
RAT230_2:1372265_AT similar to RIKEN cDNA 2810002N01 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast T45042 hypothetical protein Y39B6B.p [imported] - Caenorhabditis elegans 3.0E-78
blast CAD31827 Hypothetical protein Y39B6A.34 [Caenorhabditis elegans] ref|NP_741663.1| Y39B6A.34 [Caenorhabditis elegans] 1.0E-74
blast T45042 hypothetical protein Y39B6B.p [imported] - Caenorhabditis elegans 7.0E-73
blast CAD31827 Hypothetical protein Y39B6A.34 [Caenorhabditis elegans] ref|NP_741663.1| Y39B6A.34 [Caenorhabditis elegans] 7.0E-73
blast CAE56107 Hypothetical protein CBG23705 [Caenorhabditis briggsae] 2.0E-71
Sequence
Target Sequence 
>C. ELEGANS:183430_AT
ctcctcctcatcaaatgtccgaatggatcgccgattcgattgggttggaccgccggataa
tttatcgaaaattcgcaaaattatgctccgccgcgtcgataatgagtcggaactcgagcg
gcagtatcggctggctcgggaagagctgaatcagtggaattcggatttttgggccgaaca
caatcaactgttcgaccggcaaaagtcggattttgtcgagcgaaagcagcaagagcttgg
aagactggaacacgtgtcggcgaacgagctcagcgagttttatcgcgattttttgaatga
tcgacacgtggcgatgatggcctataataagtgggtgaaaatgcgagaatggtaccgccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCTCCTCATCAAATGTCCGAATG 563 233 27 Antisense
ATGTCCGAATGGATCGCCGATTCGA 186 47 41 Antisense
CGCCGATTCGATTGGGTTGGACCGC 368 255 55 Antisense
TTCGATTGGGTTGGACCGCCGGATA 16 693 61 Antisense
GTTGGACCGCCGGATAATTTATCGA 339 435 70 Antisense
TTCGCAAAATTATGCTCCGCCGCGT 702 693 98 Antisense
CTCCGCCGCGTCGATAATGAGTCGG 520 233 112 Antisense
GAGTCGGAACTCGAGCGGCAGTATC 356 399 130 Antisense
CGAGCGGCAGTATCGGCTGGCTCGG 379 251 141 Antisense
GATGGCCTATAATAAGTGGGTGAAA 695 399 342 Antisense
TGAAAATGCGAGAATGGTACCGCCG 194 573 362 Antisense
Sequence Source Affymetrix Proprietary Database