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[183429_at]

Description F02D10.4 /REP_DB=WormBase Gene ID /WP=CE03139 /TR=Q19114 /GB=CAA91935.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 5.4
(-3)
A 		5.4
(-3)
A 		10.9
(-2.6)
A 		87.2
(3)
A 		82
B 5.1
(-3)
A 		6.6
(-1.5)
A 		7.2
(-0.9)
A 		11
(3)
A 		6
C 9.8
(-2)
A 		7.1
(-3)
A 		9.4
(-2.2)
A 		23.4
(3)
A 		16
avr 6.8
(-2.9) 		6.4
(-3) 		9.2
(-2.5) 		40.5
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 11.1
(-1.2)
A 		9.3
(-1.7)
A 		7.2
(-2.3)
A 		4.8
(-3)
A 		25.5
(3)
A 		5.5
(-2.8)
A 		21
B 5.3
(-2.9)
A 		10.2
(-1.7)
A 		12.2
(-1.1)
A 		11
(-1.5)
A 		28.3
(3)
A 		5
(-3)
A 		23
C 28.4
(3)
A 		22.2
(1.6)
A 		6.1
(-2)
A 		8
(-1.6)
A 		3.7
(-2.5)
A 		1.5
(-3)
A 		27
avr 14.9
(1.3) 		13.9
(0.9) 		8.5
(-1.2) 		7.9
(-1.5) 		19.2
(3) 		4
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2
(-2.6)
A 		1.2
(-3)
A 		2.8
(-2.2)
A 		12.8
(3)
A 		12
B 1.6
(-3)
A 		1.6
(-3)
A 		1.7
(-2.1)
A 		2.3
(3)
A 		1
C 3.2
(0.8)
A 		2
(-3)
A 		3.3
(1.1)
A 		3.9
(3)
A 		2
avr 2.3
(-2.1) 		1.6
(-3) 		2.6
(-1.7) 		6.3
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 2
(-2.3)
A 		3.3
(-1.1)
A 		1.6
(-2.6)
A 		1.2
(-3)
A 		7.7
(3)
A 		1.3
(-2.9)
A 		7
B 1.8
(-3)
A 		3.4
(-2)
A 		3
(-2.3)
A 		2.9
(-2.3)
A 		11.5
(3)
A 		1.9
(-2.9)
A 		10
C 10.5
(3)
A 		6.8
(0.8)
A 		1.5
(-2.4)
A 		1.6
(-2.3)
A 		1.2
(-2.6)
A 		0.5
(-3)
A 		10
avr 4.8
(0.9) 		4.5
(0.5) 		2
(-2.1) 		1.9
(-2.3) 		6.8
(3) 		1.2
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183429_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17678
Sequence Type Exemplar sequence
Representative Public ID F02D10.4 NCBI
Target Description F02D10.4 /REP_DB=WormBase Gene ID /WP=CE03139 /TR=Q19114 /GB=CAA91935.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077843(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077843 NCBI Caenorhabditis elegans F02D10.4 (F02D10.4) mRNA, complete cds. 11/11 None
F02D10.4 ENSEMBL cdna:known chromosome:CEL140:X:13456955:13459849:-1 gene:F02D10.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000039151 4/11 Cross Hyb Matching Probes None
SNAP00000039144 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13456954-13459849(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F02D10.4
Entrez Gene 184084 Entrez gene
SwissProt Q19114 EMBL-EBI
WormBase CE03139 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91935 Hypothetical protein F02D10.4 [Caenorhabditis elegans] ref|NP_510244.1| F02D10.4 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:183429_AT
aagtgctgtcccgaacatttgttttcgaggtttttttctaaaaaatataatctttaaatg
ttttaaaaatccgaaaaaaaaaattccgactctatttcgaatgaaattttatagccaaaa
tctttcggaagacaagtaccaactgctattgtcacaaatggaacttccaaccataacatt
ggagtttcttcgcaaccgtttgtgcattttcaaggtcaaagctttgacagccgaatgtca
gaatttattaaactttacaataagtttgagcagtggaatatgtattataacagattgcca
tgtaagcataatcatgccctgccgaaaagatttttttcagaaaaatggtgaatcgaaaac
ggatagagattgtagtggcccatcaaaaagtgctgccccactaatcaatttttcgagaat
atttattctggagaaagattcaaactcgccgggaacctcggcactaagcacttccaaagc
tgtatctgagaatcagattctcattataaaatttagtatttttaggccacttaaatcaaa
tttaattagaatcgaagcaatcaaagcaagttttctttccagacatcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTGCTGTCCCGAACATTTGTTTT 453 157 495 Antisense
AAATTCCGACTCTATTTCGAATGAA 202 115 575 Antisense
CAAGTACCAACTGCTATTGTCACAA 441 183 627 Antisense
AACATTGGAGTTTCTTCGCAACCGT 605 135 669 Antisense
CTTCGCAACCGTTTGTGCATTTTCA 24 219 682 Antisense
GTAAGCATAATCATGCCCTGCCGAA 12 463 796 Antisense
AGTGGCCCATCAAAAAGTGCTGCCC 418 59 868 Antisense
CTGCCCCACTAATCAATTTTTCGAG 398 235 887 Antisense
TTCAAACTCGCCGGGAACCTCGGCA 223 685 933 Antisense
CTCGGCACTAAGCACTTCCAAAGCT 77 229 951 Antisense
GCAAGTTTTCTTTCCAGACATCTTC 493 321 1060 Antisense
Sequence Source Affymetrix Proprietary Database