[Home] | [Total List]

[183428_at]

Description F55G11.1 /REP_DB=WormBase Gene ID /WP=CE19899 /TR=Q9XTF2 /GB=CAB05223.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 16      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 27.7
(-3)
A 		46.9
(-1.9)
A 		72.3
(-0.6)
A 		137
(3)
A 		109
B 28.9
(-3)
A 		50.9
(-0.7)
A 		53.8
(-0.4)
A 		85.4
(3)
A 		57
C 51.1
(-3)
A 		58
(-2.5)
A 		73.3
(-1.4)
A 		135.8
(3)
M 		85
avr 35.9
(-3) 		51.9
(-1.9) 		66.5
(-0.8) 		119.4
(3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 27
(-3)
A 		67.5
(-0.3)
A 		117.4
(3)
P 		92.6
(1.4)
A 		74.6
(0.2)
A 		82
(0.7)
A 		90
B 65.3
(-2.4)
A 		76.4
(-0.8)
A 		88.3
(1)
A 		90.5
(1.3)
P 		101.7
(3)
P 		61.4
(-3)
P 		40
C 49.3
(-3)
A 		99.7
(0.7)
P 		67.4
(-1.7)
A 		131.4
(3)
P 		56.2
(-2.5)
A 		56.7
(-2.5)
A 		82
avr 47.2
(-3) 		81.2
(0.5) 		91
(1.6) 		104.8
(3) 		77.5
(0.2) 		66.7
(-1) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 10.1
(-3)
A 		10.2
(-2.9)
A 		18.9
(2.3)
A 		20.1
(3)
A 		10
B 9.2
(-3)
A 		12.6
(-0.7)
A 		12.5
(-0.8)
A 		18.2
(3)
A 		9
C 16.9
(-2.9)
A 		16.7
(-3)
A 		25.6
(3)
A 		22.9
(1.2)
M 		9
avr 12.1
(-3) 		13.2
(-2.2) 		19
(2) 		20.4
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 5
(-3)
A 		24
(2.5)
A 		25.6
(3)
P 		23.5
(2.4)
A 		22.5
(2.1)
A 		20
(1.4)
A 		21
B 22.7
(-2.6)
A 		25.4
(-1.8)
A 		21.4
(-3)
A 		24
(-2.2)
P 		41.3
(3)
P 		22.9
(-2.5)
P 		20
C 18.3
(-2.5)
A 		30.4
(3)
P 		17.2
(-3)
A 		26.4
(1.2)
P 		18.2
(-2.5)
A 		19
(-2.2)
A 		13
avr 15.3
(-3) 		26.6
(2.7) 		21.4
(0) 		24.6
(1.7) 		27.3
(3) 		20.6
(-0.4) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183428_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9056
Sequence Type Exemplar sequence
Representative Public ID F55G11.1 NCBI
Target Description F55G11.1 /REP_DB=WormBase Gene ID /WP=CE19899 /TR=Q9XTF2 /GB=CAB05223.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070075(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070075 NCBI Caenorhabditis elegans F55G11.1 (F55G11.1) mRNA, complete cds. 11/11 None
F55G11.1 ENSEMBL cdna:known chromosome:CEL140:IV:12945002:12946547:-1 gene:F55G11.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016138 5/11 Cross Hyb Matching Probes None
GENEFINDER00000016158 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12945007-12946553(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55G11.1
Entrez Gene 186336 Entrez gene
SwissProt Q9XTF2 EMBL-EBI
WormBase CE19899 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05223 Hypothetical protein F55G11.1 [Caenorhabditis elegans] emb|CAB05143.1| Hypothetical protein F55G11.1 [Caenorhabditis elegans] ref|NP_502476.1| F55G11.1 [Caenorhabditis elegans] 0.0
blast CAE65406 Hypothetical protein CBG10358 [Caenorhabditis briggsae] 2.0E-74
blast CAE60950 Hypothetical protein CBG04678 [Caenorhabditis briggsae] 3.0E-72
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502476.1 7 27-49,56-78,108-127,147-164,198-220,258-280,300-319
F55G11.1 7 27-49,56-78,108-127,147-164,198-220,258-280,300-319
Sequence
Target Sequence 
>C. ELEGANS:183428_AT
tataggatattctgtgctctctgcgtttatccagtctcgtagtcttttgcaatacggcga
ggttccattctgcgatttgctgtttcgcccagttggagcagacactccctttctccgtgt
tcctcgagagtatgtgcttccgtgggtcccaataattgccgttattctgactttcatatt
tgcattgatcacattgtgcagaatatcacgtgttggtgagggagagaaacctttgaatca
ggaagaagtggatctggcaaatgttgcagcagagactcctagactaacaactggtaaaat
caagagatcgataatctgcatgctcgctgtctacttcacatttcttgttcatgcattctg
tttctatgtctacataagcccttttacgacgaacattaactcagagaccagaaatactag
aatcctaagaaactggtcatttgatttcatgaacgtcgtatttgctggatctaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATAGGATATTCTGTGCTCTCTGCG 526 659 474 Antisense
TATCCAGTCTCGTAGTCTTTTGCAA 632 657 501 Antisense
TTGCAATACGGCGAGGTTCCATTCT 240 683 520 Antisense
GTTCCATTCTGCGATTTGCTGTTTC 390 441 535 Antisense
GTTTCGCCCAGTTGGAGCAGACACT 75 451 555 Antisense
TCCTCGAGAGTATGTGCTTCCGTGG 360 593 594 Antisense
AATTGCCGTTATTCTGACTTTCATA 447 177 627 Antisense
ATCGATAATCTGCATGCTCGCTGTC 232 35 780 Antisense
CTGTCTACTTCACATTTCTTGTTCA 398 239 800 Antisense
TTCTTGTTCATGCATTCTGTTTCTA 434 689 815 Antisense
GAACGTCGTATTTGCTGGATCTAGA 441 347 924 Antisense
Sequence Source Affymetrix Proprietary Database