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[183423_at]

Description ZC455.11 /REP_DB=WormBase Gene ID /WP=CE06600 /TR=Q23331 /GB=CAA99952.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 01      6grp_cgc > 53      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 55.8
(-2.3)
A 		52.9
(-2.4)
A 		38.3
(-3)
A 		189.9
(3)
P 		152
B 35.6
(-1.2)
A 		26.9
(-3)
A 		56.3
(3)
A 		26.7
(-3)
A 		30
C 30
(-2.8)
A 		26.6
(-3)
A 		41.3
(-2.2)
A 		131.5
(3)
P 		105
avr 40.5
(-2.6) 		35.5
(-3) 		45.3
(-2.3) 		116
(3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 39.4
(1.9)
A 		12
(-2.7)
A 		45.7
(3)
A 		10.1
(-3)
A 		26
(-0.3)
A 		31.9
(0.7)
A 		36
B 27.4
(-0.9)
A 		58.2
(3)
A 		28.3
(-0.8)
A 		11.4
(-3)
A 		31.5
(-0.4)
A 		12.4
(-2.9)
A 		47
C 8
(-3)
A 		57.6
(3)
A 		14.4
(-2.2)
A 		34.7
(0.2)
A 		12.4
(-2.5)
A 		17.5
(-1.9)
A 		50
avr 24.9
(-1.4) 		42.6
(3) 		29.5
(-0.3) 		18.7
(-3) 		23.3
(-1.8) 		20.6
(-2.5) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 20.3
(0.5)
A 		11.5
(-2.5)
A 		10
(-3)
A 		27.8
(3)
P 		18
B 11.3
(1.6)
A 		6.6
(-2.3)
A 		13
(3)
A 		5.7
(-3)
A 		7
C 9.9
(-2.1)
A 		7.6
(-3)
A 		14.4
(-0.2)
A 		22.2
(3)
P 		15
avr 13.8
(0.1) 		8.6
(-3) 		12.5
(-0.7) 		18.6
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 7.3
(0.9)
A 		4.3
(-1.6)
A 		9.9
(3)
A 		2.6
(-3)
A 		7.8
(1.3)
A 		7.8
(1.3)
A 		7
B 9.5
(-0.6)
A 		19.4
(3)
A 		6.9
(-1.6)
A 		3
(-3)
A 		12.8
(0.6)
A 		4.6
(-2.4)
A 		16
C 3
(-3)
A 		17.6
(3)
A 		3.7
(-2.7)
A 		7
(-1.4)
A 		4
(-2.6)
A 		5.9
(-1.8)
A 		15
avr 6.6
(-1.5) 		13.8
(3) 		6.8
(-1.4) 		4.2
(-3) 		8.2
(-0.5) 		6.1
(-1.8) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183423_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14553
Sequence Type Exemplar sequence
Representative Public ID ZC455.11 NCBI
Target Description ZC455.11 /REP_DB=WormBase Gene ID /WP=CE06600 /TR=Q23331 /GB=CAA99952.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073803
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000034479 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12803994:12808692:1 11/11 None
ZC455.12 ENSEMBL cdna:pseudogene chromosome:CEL140:V:12807739:12808718:1 gene:ZC455.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12806163-12808718(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZC455.12
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99952 Hypothetical protein ZC455.11 [Caenorhabditis elegans] ref|NP_506204.2| Serpentine Receptor, class BC (class B-like) family member (srbc-45) [Caenorhabditis elegans] 1.0E-113
blast CAE64001 Hypothetical protein CBG08595 [Caenorhabditis briggsae] 3.0E-89
blast CAE74173 Hypothetical protein CBG21846 [Caenorhabditis briggsae] 4.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 1.1E-33
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 6.5E-58
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000034479 8 85-107,127-149,182-204,288-310,325-347,367-389,417-439,451-473
Sequence
Target Sequence 
>C. ELEGANS:183423_AT
gatgttttctttccgcaattattgcaattgaaagagtaattggaacagcgactcctataa
aatttcataactaccgtaaccgagtctcaaatataccgatttttctgtttgtttttgcta
ctggcgtatcactaaatgcagttctctttggttactgtggatttcgcctggaaccaaatc
ctaattgtgtgaactttttctgttctactcctctctgttttcaagaatattcttcaatta
ctcgaatattttattcatcgatcaatattttattttcgactattctttgcattaaactat
ttttcatgtcttctagtcaaacatcggatcttcgaaaattgaacttgatttccttaactg
attgtttttcggtttcattgtttgaactaatcccgtggattttgtttacatacgaaattg
ttagcgatgagggtcttgggccagttgttggagcttttcgttac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTTTTCTTTCCGCAATTATTGC 65 409 857 Antisense
CATAACTACCGTAACCGAGTCTCAA 431 209 922 Antisense
TTCTGTTTGTTTTTGCTACTGGCGT 243 693 959 Antisense
ACTAAATGCAGTTCTCTTTGGTTAC 573 99 987 Antisense
GTTACTGTGGATTTCGCCTGGAACC 48 445 1007 Antisense
GTGAACTTTTTCTGTTCTACTCCTC 628 481 1045 Antisense
TCTACTCCTCTCTGTTTTCAAGAAT 241 615 1060 Antisense
GTCTTCTAGTCAAACATCGGATCTT 292 469 1164 Antisense
CATTGTTTGAACTAATCCCGTGGAT 668 213 1232 Antisense
TAGCGATGAGGGTCTTGGGCCAGTT 552 651 1278 Antisense
GCCAGTTGTTGGAGCTTTTCGTTAC 582 277 1296 Antisense
Sequence Source Affymetrix Proprietary Database