[Home] | [Total List]

[183422_at]

Description Y8A9A.6 /REP_DB=WormBase Gene ID /WP=CE21340 /TR=Q9TYK2 /GB=AAK18992.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 61      6grp_cgc > 53      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 6.2
(-3)
A 		10.5
(-1.6)
A 		25.2
(3)
A 		16
(0.1)
A 		19
B 19
(-1.1)
A 		8.8
(-2.9)
A 		42.5
(3)
A 		8.2
(-3)
A 		34
C 46.3
(3)
A 		42
(2.3)
A 		7
(-3)
A 		6.7
(-3)
A 		40
avr 23.8
(2.5) 		20.4
(1.2) 		24.9
(3) 		10.3
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 42.6
(2.9)
A 		40.5
(2.6)
A 		30.9
(1.2)
A 		43.2
(3)
A 		8.4
(-2.1)
A 		2.3
(-3)
A 		41
B 31
(-0.3)
A 		46.9
(1.6)
A 		13.5
(-2.5)
A 		9.7
(-3)
A 		57.9
(3)
A 		22.5
(-1.4)
A 		48
C 5
(-3)
A 		71.1
(3)
A 		36.8
(-0.1)
A 		7.8
(-2.7)
A 		5.6
(-2.9)
A 		13
(-2.3)
A 		66
avr 26.2
(-1) 		52.8
(3) 		27.1
(-0.8) 		20.2
(-1.9) 		24
(-1.3) 		12.6
(-3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2.3
(-3)
A 		2.3
(-3)
A 		6.6
(3)
A 		2.3
(-3)
A 		4
B 6
(0.1)
A 		2.2
(-2.6)
A 		9.9
(3)
A 		1.7
(-3)
A 		8
C 15.3
(3)
A 		12.1
(1.6)
A 		2.4
(-2.5)
A 		1.1
(-3)
A 		14
avr 7.9
(3) 		5.5
(0.7) 		6.3
(1.5) 		1.7
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 7.9
(0.2)
A 		14.4
(3)
A 		6.7
(-0.3)
A 		11
(1.5)
A 		2.5
(-2.2)
A 		0.6
(-3)
A 		14
B 10.8
(-0.6)
A 		15.6
(0.7)
A 		3.3
(-2.8)
A 		2.6
(-3)
A 		23.5
(3)
A 		8.4
(-1.3)
A 		21
C 1.9
(-2.9)
A 		21.7
(3)
A 		9.4
(-0.7)
A 		1.6
(-3)
A 		1.8
(-2.9)
A 		4.4
(-2.2)
A 		20
avr 6.9
(-1.9) 		17.2
(3) 		6.5
(-2.1) 		5.1
(-2.7) 		9.3
(-0.7) 		4.5
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183422_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5676
Sequence Type Exemplar sequence
Representative Public ID Y8A9A.6 NCBI
Target Description Y8A9A.6 /REP_DB=WormBase Gene ID /WP=CE21340 /TR=Q9TYK2 /GB=AAK18992.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062254(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062254 NCBI Caenorhabditis elegans INSulin related family member (ins-32) (ins-32) mRNA, complete cds. 11/11 None
Y8A9A.6 ENSEMBL cdna:known chromosome:CEL140:II:3802970:3803312:-1 gene:Y8A9A.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3802968-3803311(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ins-32
Ensembl Y8A9A.6
Entrez Gene 189403 Entrez gene
SwissProt Q9TYK2 EMBL-EBI
WormBase CE21340 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7582 physiological process inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5179 hormone activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18992 Insulin related protein 32 [Caenorhabditis elegans] ref|NP_494655.1| INSulin related family member (ins-32) [Caenorhabditis elegans] 1.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR003235 EMBL-EBI Nematode insulin-related peptide, beta type 8.2E-37
Sequence
Target Sequence 
>C. ELEGANS:183422_AT
ctcgattctgttgatccttctattggttatcaccgtcaccgggatgttccaggagctctc
cgatttacagaaccttcaccggttccttgaaggactccaaggatcctcctcacttgctgt
aaaatcaagaagccgcagagagctaatttgtggtaggcgactaagtaagacggtaaccaa
cctttgcgtggagatgaatccacaaaaggaggaggacatcgcaacgaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCGATTCTGTTGATCCTTCTATTG 127 233 18 Antisense
GATCCTTCTATTGGTTATCACCGTC 153 417 30 Antisense
TATCACCGTCACCGGGATGTTCCAG 523 655 45 Antisense
GATGTTCCAGGAGCTCTCCGATTTA 150 409 60 Antisense
GAGCTCTCCGATTTACAGAACCTTC 118 387 70 Antisense
CAGAACCTTCACCGGTTCCTTGAAG 510 191 85 Antisense
TGAAGGACTCCAAGGATCCTCCTCA 601 573 105 Antisense
GAAGCCGCAGAGAGCTAATTTGTGG 31 345 146 Antisense
GTGGTAGGCGACTAAGTAAGACGGT 503 485 167 Antisense
GACGGTAACCAACCTTTGCGTGGAG 114 375 186 Antisense
AAGGAGGAGGACATCGCAACGAAAT 75 161 223 Antisense
Sequence Source Affymetrix Proprietary Database