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[183420_at]

Description C33H5.8 /REP_DB=WormBase Gene ID /WP=CE04151 /TR=Q18405 /GB=AAA82267.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 75      4grp_highest_8_8 > 62      4grp_high_8_8 > 18      6grp_highest_nonorm > 85      6grp_total > 75      4grp_total > 29      6grp_highest_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 467
1 2 3 4 range
A 905.9
(2.8)
P 		715.2
(-0.1)
P 		520.7
(-3)
P 		919.2
(3)
P 		399
B 934.4
(2.7)
P 		759
(0.1)
P 		545.8
(-3)
P 		956.5
(3)
P 		411
C 988
(3)
P 		716.3
(-1.8)
P 		646.3
(-3)
P 		831.9
(0.3)
P 		342
avr 942.8
(3) 		730.2
(-0.4) 		570.9
(-3) 		902.5
(2.3) 		372

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 513
1 2 3 4 5 6 range
A 877.7
(2.3)
P 		655.8
(-3)
P 		904.9
(3)
P 		707.2
(-1.8)
P 		828
(1.1)
P 		865.1
(2)
P 		249
B 820
(-1)
P 		693.6
(-3)
P 		920.7
(0.6)
P 		872.6
(-0.2)
P 		749.1
(-2.1)
P 		1070.5
(3)
P 		377
C 577.6
(-3)
P 		772.9
(-0.7)
P 		704.1
(-1.5)
P 		942.8
(1.3)
P 		645.5
(-2.2)
P 		1090.7
(3)
P 		513
avr 758.4
(-2) 		707.4
(-3) 		843.2
(-0.3) 		840.9
(-0.3) 		740.9
(-2.3) 		1008.8
(3) 		301
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 203
1 2 3 4 range
A 329.8
(3)
P 		155.3
(-2.4)
P 		136.1
(-3)
P 		134.5
(-3)
P 		195
B 298
(3)
P 		187.5
(-0.9)
P 		126.5
(-3)
P 		203.8
(-0.3)
P 		172
C 327
(3)
P 		205.9
(-0.9)
P 		225.3
(-0.3)
P 		140.3
(-3)
P 		187
avr 318.3
(3) 		182.9
(-2.1) 		162.6
(-2.9) 		159.5
(-3) 		159

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 237
1 2 3 4 5 6 range
A 161.8
(-3)
P 		233.2
(1.9)
P 		197.1
(-0.6)
P 		179.4
(-1.8)
P 		249.8
(3)
P 		210.6
(0.3)
P 		88
B 285.3
(-0.9)
P 		230.9
(-2.8)
P 		223.6
(-3)
P 		231.1
(-2.7)
P 		304.4
(-0.2)
P 		399.2
(3)
P 		176
C 214.1
(-1.9)
P 		235.8
(-1.2)
P 		179.2
(-3)
P 		189.6
(-2.7)
P 		208.9
(-2)
P 		365.1
(3)
P 		186
avr 220.4
(-2) 		233.3
(-1.4) 		200
(-3) 		200
(-3) 		254.4
(-0.4) 		325
(3) 		125
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183420_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10010
Sequence Type Exemplar sequence
Representative Public ID C33H5.8 NCBI
Target Description C33H5.8 /REP_DB=WormBase Gene ID /WP=CE04151 /TR=Q18405 /GB=AAA82267.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068881(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068881 NCBI Caenorhabditis elegans C33H5.8 (C33H5.8) mRNA, complete cds. 11/11 None
SNAP00000004476 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7778004:7778946:-1 11/11 None
GENEFINDER00000004503 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7778004:7778946:-1 11/11 None
C33H5.8 ENSEMBL cdna:known chromosome:CEL140:IV:7778004:7778946:-1 gene:C33H5.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7778009-7778952(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C33H5.8
Entrez Gene 183187 Entrez gene
SwissProt Q18405 EMBL-EBI
WormBase CE04151 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82267 Hypothetical protein C33H5.8 [Caenorhabditis elegans] ref|NP_501282.1| C33H5.8 [Caenorhabditis elegans] 1.0E-157
blast AAU94374 At1g56440 [Arabidopsis thaliana] ref|NP_176039.2| serine/threonine protein phosphatase-related [Arabidopsis thaliana] gb|AAX12885.1| At1g56440 [Arabidopsis thaliana] 8.0E-14
blast AAG40278 serine/threonine protein phosphatase type 5 [Trypanosoma brucei] 2.0E-12
Sequence
Target Sequence 
>C. ELEGANS:183420_AT
atgtgcaagttattgatcttccgtcaatcgaaagagacgaatatctacaatcagatgaaa
aattcacaaaaatcgactttacgtacaatattgagaagatcgaggagatcattgtcgctg
aagaaccagagaatgataatattgttccaaagtatataacaaagcttccaccacacccaa
aggactatcaagattttgttggagctgtgaatatgttgaaaagagcccaaagtttgcttc
ctcttgcagaatatttcttaaatatcagcatggataaatattcagaattattcgatgaac
tcctagacgatgtatatgctgttcaaatcttcaaggcactcaactttcatctgaaaactg
gtcgcacgattccccatctcgccgcacgaatgatgatcatcagtgaactcagtcgttttg
atcttttaatcgcatttatgtccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGCAAGTTATTGATCTTCCGTC 274 49 377 Antisense
TTCCACCACACCCAAAGGACTATCA 33 697 542 Antisense
AAAGAGCCCAAAGTTTGCTTCCTCT 474 123 596 Antisense
GTTTGCTTCCTCTTGCAGAATATTT 547 451 608 Antisense
GAACTCCTAGACGATGTATATGCTG 434 349 673 Antisense
GCTGTTCAAATCTTCAAGGCACTCA 530 295 694 Antisense
TCAAGGCACTCAACTTTCATCTGAA 248 633 707 Antisense
TGAAAACTGGTCGCACGATTCCCCA 532 571 728 Antisense
CCCATCTCGCCGCACGAATGATGAT 378 259 749 Antisense
GATCATCAGTGAACTCAGTCGTTTT 629 419 771 Antisense
GATCTTTTAATCGCATTTATGTCCG 103 421 796 Antisense
Sequence Source Affymetrix Proprietary Database