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[183417_at]

Description T23C6.1 /REP_DB=WormBase Gene ID /WP=CE07526 /TR=O02042 /GB=AAB52882.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 46      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 90      6grp_total > 47      4grp_total > 38      6grp_highest_sub > Cu      6grp_cgc > 26      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 232.7
(3)
P 		159.4
(-0.6)
P 		110.7
(-3)
P 		187.6
(0.8)
P 		122
B 208.5
(3)
P 		169.5
(0.6)
P 		111.2
(-3)
P 		144.7
(-0.9)
P 		97
C 213.7
(3)
P 		130.9
(-2.9)
P 		154.5
(-1.3)
P 		130.2
(-3)
P 		84
avr 218.3
(3) 		153.3
(-1.2) 		125.5
(-3) 		154.2
(-1.1) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 180.6
(1.8)
P 		137
(-3)
P 		165.1
(0.1)
P 		151.5
(-1.4)
P 		141.4
(-2.5)
P 		191.8
(3)
P 		55
B 207
(3)
P 		157.1
(-0.9)
P 		166
(-0.2)
P 		169.6
(0.1)
P 		129.5
(-3)
P 		178.1
(0.8)
P 		78
C 168.7
(-0.4)
P 		212.8
(3)
P 		162
(-0.9)
P 		212.6
(3)
P 		135.2
(-3)
P 		207.9
(2.6)
P 		78
avr 185.4
(2.2) 		169
(0.5) 		164.4
(0) 		177.9
(1.5) 		135.4
(-3) 		192.6
(3) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 84.7
(3)
P 		34.6
(-2.3)
P 		28.9
(-2.9)
P 		27.5
(-3)
P 		57
B 66.5
(3)
P 		41.9
(-0.6)
P 		25.8
(-3)
P 		30.8
(-2.3)
P 		41
C 70.7
(3)
P 		37.6
(-1.1)
P 		53.8
(0.9)
P 		21.9
(-3)
P 		49
avr 74
(3) 		38
(-1.6) 		36.2
(-1.8) 		26.7
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 33.3
(-3)
P 		48.7
(3)
P 		36
(-1.9)
P 		38.4
(-1)
P 		42.7
(0.7)
P 		46.7
(2.2)
P 		15
B 72
(3)
P 		52.3
(-0.7)
P 		40.3
(-3)
P 		44.9
(-2.1)
P 		52.6
(-0.7)
P 		66.4
(1.9)
P 		32
C 62.5
(1.5)
P 		64.9
(2)
P 		41.2
(-3)
P 		42.8
(-2.7)
P 		43.8
(-2.5)
P 		69.6
(3)
P 		28
avr 55.9
(1.6) 		55.3
(1.5) 		39.2
(-3) 		42
(-2.2) 		46.4
(-1) 		60.9
(3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183417_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17828
Sequence Type Exemplar sequence
Representative Public ID T23C6.1 NCBI
Target Description T23C6.1 /REP_DB=WormBase Gene ID /WP=CE07526 /TR=O02042 /GB=AAB52882.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078377(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078377 NCBI Caenorhabditis elegans MeDiaTor family member (mdt-1.2) (mdt-1.2) mRNA, complete cds. 11/11 None
SNAP00000033356 ENSEMBL cdna:SNAP chromosome:CEL140:X:17151435:17154385:1 11/11 None
GENEFINDER00000033360 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17151435:17154385:1 11/11 None
T23C6.1 ENSEMBL cdna:known chromosome:CEL140:X:17151434:17154459:1 gene:T23C6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17151434-17154385(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol mdt-1.2
Ensembl T23C6.1
Entrez Gene 181755 Entrez gene
SwissProt O02042 EMBL-EBI
WormBase CE07526 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52882 Mediator protein 1.2 [Caenorhabditis elegans] ref|NP_510778.1| MeDiaTor family member (mdt-1.2) [Caenorhabditis elegans] 0.0
blast CAE69698 Hypothetical protein CBG15955 [Caenorhabditis briggsae] 1.0E-170
blast CAE69698 Hypothetical protein CBG15955 [Caenorhabditis briggsae] 1.0E-165
blast AAL27266 Suppressor of pal-1 protein 3, isoform b [Caenorhabditis elegans] ref|NP_001021811.1| Suppressor of Pal-1 family member (sop-3) [Caenorhabditis elegans] 2.0E-92
Sequence
Target Sequence 
>C. ELEGANS:183417_AT
gatggacaaactcaacacttctacaatgtcgatgtgaaccagttgcgcaatgatggtgac
tctgtgatcactgagatttatttgaagcatttgcaagattttcatgagataattgcaatt
cttcgcaacgaagccatgcatatcagcctttgggagtcgatgatatccgcgtgttatgag
aagcagggtatgaaaaagcacacggttgccgcaatcaagatggacgtttttctgacaaga
gagcaaattgtaatcacctttgatacaaaatttgcgccggtcaaagttgtaatccaggat
agtggagtttgtgaggcaaaggtgaatgttgtgcatgcacagacaggcctccagattgct
gaaaagattgatgaaacattgagcagaaaactcaatgaaacttggagcattccaaatatg
cttacctacgccgtgtcgggtagtgactgcaacttggcaaagatcaaagttccgttgaga
agtgaaaacccggagactgtgggccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGACAAACTCAACACTTCTACA 704 405 1042 Antisense
ATGTCGATGTGAACCAGTTGCGCAA 268 49 1067 Antisense
GTTGCGCAATGATGGTGACTCTGTG 494 439 1083 Antisense
GAAGCCATGCATATCAGCCTTTGGG 143 345 1171 Antisense
GGGAGTCGATGATATCCGCGTGTTA 220 495 1193 Antisense
AAAAGCACACGGTTGCCGCAATCAA 305 131 1235 Antisense
GCGCCGGTCAAAGTTGTAATCCAGG 202 287 1315 Antisense
CACAGACAGGCCTCCAGATTGCTGA 493 195 1379 Antisense
TCCAAATATGCTTACCTACGCCGTG 298 587 1452 Antisense
CGCCGTGTCGGGTAGTGACTGCAAC 175 255 1470 Antisense
TGAAAACCCGGAGACTGTGGGCCCA 179 573 1524 Antisense
Sequence Source Affymetrix Proprietary Database