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[183415_at]

Description K01D12.3 /REP_DB=WormBase Gene ID /WP=CE06042 /TR=Q21100 /GB=CAA99877.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 43      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 0.8
(-3)
A 		27.9
(3)
A 		18.1
(0.8)
A 		4.9
(-2.1)
A 		27
B 0.7
(-3)
A 		29.4
(3)
A 		6
(-1.9)
A 		0.5
(-3)
A 		29
C 25.9
(2.5)
A 		28.3
(3)
A 		16.4
(0.3)
A 		1.8
(-3)
A 		27
avr 9.1
(-1.5) 		28.5
(3) 		13.5
(-0.4) 		2.4
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 4
(-2.3)
A 		6.8
(-1.6)
A 		22.2
(2)
A 		26.5
(3)
A 		0.8
(-3)
A 		12.8
(-0.2)
A 		26
B 18.3
(1)
A 		4
(-2.3)
A 		24.2
(2.3)
A 		0.7
(-3)
A 		27.1
(3)
A 		11.4
(-0.6)
A 		26
C 1.2
(-3)
A 		20.7
(3)
A 		6.2
(-1.5)
A 		19.7
(2.7)
A 		19.8
(2.7)
A 		12.7
(0.5)
A 		20
avr 7.8
(-3) 		10.5
(-1.3) 		17.5
(3) 		15.6
(1.8) 		15.9
(2) 		12.3
(-0.2) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.3
(-3)
A 		6.1
(3)
A 		4.7
(1.6)
A 		0.7
(-2.6)
A 		6
B 0.2
(-2.9)
A 		7.3
(3)
A 		1.4
(-1.9)
A 		0.1
(-3)
A 		7
C 8.6
(3)
A 		8.1
(2.6)
A 		5.7
(0.9)
A 		0.3
(-3)
A 		8
avr 3
(-0.7) 		7.2
(3) 		3.9
(0.1) 		0.4
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.7
(-2.5)
A 		2.4
(-1)
A 		4.8
(1.2)
A 		6.7
(3)
A 		0.2
(-3)
A 		3.1
(-0.3)
A 		7
B 6.4
(0.4)
A 		1.3
(-2.4)
A 		5.9
(0.2)
A 		0.2
(-3)
A 		11
(3)
A 		4.3
(-0.7)
A 		11
C 0.5
(-3)
A 		6.3
(2.9)
A 		1.6
(-1.9)
A 		4
(0.6)
A 		6.4
(3)
A 		4.3
(0.9)
A 		6
avr 2.5
(-3) 		3.3
(-1.6) 		4.1
(-0.2) 		3.6
(-1.1) 		5.9
(3) 		3.9
(-0.5) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183415_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12580
Sequence Type Exemplar sequence
Representative Public ID K01D12.3 NCBI
Target Description K01D12.3 /REP_DB=WormBase Gene ID /WP=CE06042 /TR=Q21100 /GB=CAA99877.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073700(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073700 NCBI Caenorhabditis elegans K01D12.3 (K01D12.3) mRNA, complete cds. 11/11 None
SNAP00000007088 ENSEMBL cdna:SNAP chromosome:CEL140:V:12386996:12388209:1 11/11 None
GENEFINDER00000007108 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12386915:12388357:1 11/11 None
K01D12.3 ENSEMBL cdna:known chromosome:CEL140:V:12386915:12388209:1 gene:K01D12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12386914-12388209(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K01D12.3
Entrez Gene 186844 Entrez gene
SwissProt Q21100 EMBL-EBI
WormBase CE06042 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99877 Hypothetical protein K01D12.3 [Caenorhabditis elegans] ref|NP_506101.1| K01D12.3 [Caenorhabditis elegans] 1.0E-162
blast CAA99877 Hypothetical protein K01D12.3 [Caenorhabditis elegans] ref|NP_506101.1| K01D12.3 [Caenorhabditis elegans] 1.0E-157
blast CAA99877 Hypothetical protein K01D12.3 [Caenorhabditis elegans] ref|NP_506101.1| K01D12.3 [Caenorhabditis elegans] 1.0E-155
blast AAB69880 Hypothetical protein C13A2.9 [Caenorhabditis elegans] ref|NP_504845.1| C13A2.9 [Caenorhabditis elegans] 3.0E-94
blast CAE62297 Hypothetical protein CBG06357 [Caenorhabditis briggsae] 3.0E-91
Protein Domains
Database ID Description E-Value
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 9.2E-58
Pfam IPR002485 EMBL-EBI Protein of unknown function DUF13 9.2E-58
Sequence
Target Sequence 
>C. ELEGANS:183415_AT
gaaaccaaatatgttgctttgccaaaaacgaacgaactcttgactatggttactctggga
attgggcatgatgtaggtgcagaggttaaactgaaagagctttatccaaaaattgatttt
ttcggagcagatccagcagcagtgatcaataaagatctttatgagaatacattaggagga
aaatatttccaatatgctgtcagcggagaaagtggaatgcaacgctcaagtgtatatgaa
aaggatcgataccaggacagagtgacaaagcacgtcaaggctgattatttctttaaaaac
attcttcataaaactaaaatcgatatgctttggattgatgttgagcaaaatgaatatcca
attcttgatcaaattcatcgaaacgaggcaatcgacaaggaaggtatacttctgtgtcaa
atcaatgttgaacttcacaaaggaattttcggcgaagttgaagatcaaatgaaaaagctt
catgattttgtatggagacttcttgacgaaaaacgatatgttatgatgaaacctcacttt
gttttgtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAACCAAATATGTTGCTTTGCCAA 243 359 220 Antisense
CGAACTCTTGACTATGGTTACTCTG 189 253 252 Antisense
GGTTACTCTGGGAATTGGGCATGAT 538 505 267 Antisense
TTTCGGAGCAGATCCAGCAGCAGTG 292 671 339 Antisense
ATATTTCCAATATGCTGTCAGCGGA 670 19 402 Antisense
GGAATGCAACGCTCAAGTGTATATG 223 529 433 Antisense
GGATCGATACCAGGACAGAGTGACA 501 511 462 Antisense
AGCACGTCAAGGCTGATTATTTCTT 487 77 488 Antisense
GGTATACTTCTGTGTCAAATCAATG 631 503 622 Antisense
TGATTTTGTATGGAGACTTCTTGAC 217 565 702 Antisense
GATGAAACCTCACTTTGTTTTGTAC 453 411 744 Antisense
Sequence Source Affymetrix Proprietary Database