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[183414_at]

Description F23D12.4 /REP_DB=WormBase Gene ID /WP=CE05702 /TR=Q19758 /GB=CAA94914.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 27      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 31.1
(-0.6)
M 		39.4
(2)
A 		23.6
(-3)
A 		42.6
(3)
A 		19
B 52.5
(-0.6)
A 		68.3
(3)
A 		42.3
(-3)
A 		47
(-1.9)
P 		26
C 42.2
(-2.1)
A 		39.5
(-3)
A 		46.7
(-0.7)
M 		58.3
(3)
P 		19
avr 41.9
(-0.8) 		49.1
(2.9) 		37.5
(-3) 		49.3
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 62.7
(3)
A 		44.4
(0.3)
A 		61.7
(2.9)
A 		22
(-3)
A 		51.7
(1.4)
A 		47.6
(0.8)
A 		41
B 14.6
(-3)
A 		25.8
(-1.3)
A 		50.6
(2.4)
A 		26.1
(-1.3)
A 		49.9
(2.3)
M 		54.4
(3)
P 		40
C 22.6
(-2.6)
A 		49.6
(-0.7)
A 		37.3
(-1.5)
A 		16.5
(-3)
A 		26.7
(-2.3)
A 		102.2
(3)
P 		86
avr 33.3
(-1.5) 		39.9
(-0.6) 		49.9
(0.7) 		21.5
(-3) 		42.8
(-0.3) 		68.1
(3) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11.3
(3)
M 		8.5
(-0.3)
A 		6.2
(-3)
A 		6.2
(-3)
A 		5
B 16.8
(2.9)
A 		16.9
(3)
A 		9.8
(-3)
A 		10
(-2.8)
P 		7
C 14
(0.9)
A 		11.3
(-1.6)
A 		16.3
(3)
M 		9.8
(-3)
P 		7
avr 14
(3) 		12.2
(1) 		10.8
(-0.6) 		8.7
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 11.6
(0.5)
A 		15.8
(3)
A 		13.4
(1.6)
A 		5.6
(-3)
A 		15.6
(2.9)
A 		11.6
(0.5)
A 		10
B 5.1
(-3)
A 		8.6
(-1.6)
A 		12.3
(-0.2)
A 		6.9
(-2.3)
A 		20.3
(3)
M 		20.3
(3)
P 		15
C 8.4
(-2)
A 		15.1
(-0.7)
A 		9.5
(-1.8)
A 		3.3
(-3)
A 		8.6
(-2)
A 		34.2
(3)
P 		31
avr 8.4
(-1.9) 		13.2
(-0.2) 		11.7
(-0.7) 		5.3
(-3) 		14.8
(0.4) 		22
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183414_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17837
Sequence Type Exemplar sequence
Representative Public ID F23D12.4 NCBI
Target Description F23D12.4 /REP_DB=WormBase Gene ID /WP=CE05702 /TR=Q19758 /GB=CAA94914.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078003(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078003 NCBI Caenorhabditis elegans F23D12.4 (F23D12.4) mRNA, complete cds. 11/11 None
SNAP00000042574 ENSEMBL cdna:SNAP chromosome:CEL140:X:14444921:14446043:1 11/11 None
GENEFINDER00000042583 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14444921:14446043:1 11/11 None
F23D12.4 ENSEMBL cdna:known chromosome:CEL140:X:14444921:14446043:1 gene:F23D12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14444920-14446043(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F23D12.4
Entrez Gene 184897 Entrez gene
SwissProt Q19758 EMBL-EBI
WormBase CE05702 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94914 Hypothetical protein F23D12.4 [Caenorhabditis elegans] ref|NP_510404.1| F23D12.4 [Caenorhabditis elegans] 1.0E-113
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.6E-5
Sequence
Target Sequence 
>C. ELEGANS:183414_AT
tgaagagttgccttcattgccactcggtgatattgtgaaacaattgccaatgttcgagct
cgtgaaactggcgttactatctcaaaaagcaaagagatgggtattggagcactcgcgtcg
acatcttgttcaattgactgtcaatctcggagaaacgttcatcatcaaaatcggatatga
cggagaagcaaccaacgagattgtgaacataaaactggatgatatgcctccaaagagggt
gtatagaactaggagctcaacgagactgccaatgaatttattgaaaattgaccccatttt
cccatcatgctgcgccaaaaacacctatggaactcgagtcgaaacagtgaagtatttgat
taaatacttttcaaagacgttcaagatgatctcgatggaactcacctttgataagcagcc
cgacgctgtgattcttgatatcatcaaccttgtgaatcatttgaaaatcaaaatggatac
tctggcagttgctggaaagaacaacagcgacgaagtgttcaagtgcatcattgatgaagt
tagccgagtttcgtctcttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGAGTTGCCTTCATTGCCACTC 413 575 69 Antisense
CAATTGCCAATGTTCGAGCTCGTGA 276 179 109 Antisense
GAGCTCGTGAAACTGGCGTTACTAT 217 387 124 Antisense
AGATGGGTATTGGAGCACTCGCGTC 669 65 163 Antisense
CTCGCGTCGACATCTTGTTCAATTG 288 233 180 Antisense
AGGAGCTCAACGAGACTGCCAATGA 392 55 319 Antisense
GAAAATTGACCCCATTTTCCCATCA 243 353 351 Antisense
ATCATGCTGCGCCAAAAACACCTAT 685 29 372 Antisense
GGAACTCACCTTTGATAAGCAGCCC 432 529 465 Antisense
TAAGCAGCCCGACGCTGTGATTCTT 640 637 480 Antisense
AAGTTAGCCGAGTTTCGTCTCTTCA 264 157 605 Antisense
Sequence Source Affymetrix Proprietary Database