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[183412_at]

Description Y39B6B.H /REP_DB=WormBase Gene ID /WP=CE21683 /TR=Q9NEV2 /GB=CAB60913.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_highest_8_8 > 0      4grp_high_8_8 > 36      6grp_total > 60      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 143.3
(-2.1)
P 		165.7
(2)
P 		171
(3)
P 		138.5
(-3)
P 		33
B 179.6
(-1.5)
P 		187.7
(-0.7)
P 		163.9
(-3)
P 		225.4
(3)
P 		62
C 195.8
(-0.7)
P 		257.7
(3)
P 		158.3
(-3)
P 		168.1
(-2.4)
P 		99
avr 172.9
(-1.7) 		203.7
(3) 		164.4
(-3) 		177.3
(-1) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 57.2
(-3)
M 		101.4
(1)
P 		80.9
(-0.9)
P 		123.6
(3)
M 		93.4
(0.3)
M 		103.9
(1.2)
P 		66
B 116
(3)
P 		49.3
(-3)
P 		93.3
(1)
P 		92.2
(0.9)
P 		55.3
(-2.5)
A 		72.6
(-0.9)
M 		67
C 71.7
(-0.6)
P 		66.2
(-1.2)
A 		107.4
(3)
P 		91.5
(1.4)
A 		48.1
(-3)
A 		60.1
(-1.8)
P 		59
avr 81.6
(-0.4) 		72.3
(-1.9) 		93.9
(1.6) 		102.4
(3) 		65.6
(-3) 		78.9
(-0.8) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 52.2
(3)
P 		36
(-0)
P 		44.7
(1.6)
P 		20.3
(-3)
P 		32
B 57.3
(3)
P 		46.4
(-0.4)
P 		38
(-3)
P 		48
(0.1)
P 		19
C 64.8
(1.8)
P 		74.1
(3)
P 		55.2
(0.5)
P 		28.3
(-3)
P 		46
avr 58.1
(3) 		52.2
(1.6) 		46
(0.2) 		32.2
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 10.6
(-3)
M 		36.1
(3)
P 		17.6
(-1.4)
P 		31.4
(1.9)
M 		28.2
(1.1)
M 		25.3
(0.5)
P 		26
B 40.3
(3)
P 		16.4
(-3)
P 		22.6
(-1.4)
P 		24.4
(-1)
P 		22.5
(-1.5)
A 		27.1
(-0.3)
M 		24
C 26.6
(2.6)
P 		20.2
(-0.6)
A 		27.3
(3)
P 		18.4
(-1.6)
A 		15.6
(-3)
A 		20.1
(-0.7)
P 		12
avr 25.8
(3) 		24.2
(0.4) 		22.5
(-2.4) 		24.7
(1.2) 		22.1
(-3) 		24.2
(0.4) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183412_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19446
Sequence Type Exemplar sequence
Representative Public ID Y39B6B.H NCBI
Target Description Y39B6B.H /REP_DB=WormBase Gene ID /WP=CE21683 /TR=Q9NEV2 /GB=CAB60913.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000030542 ENSEMBL cdna:SNAP chromosome:CEL140:V:19049620:19051019:1 11/11 None
GENEFINDER00000030717 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19049620:19051019:1 11/11 None
Y39B6A.21 ENSEMBL cdna:pseudogene chromosome:CEL140:V:19049620:19051240:1 gene:Y39B6A.21 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19049619-19051019(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y39B6A.21
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T45034 hypothetical protein Y39B6B.h [imported] - Caenorhabditis elegans 0.0
blast CAE72985 Hypothetical protein CBG20329 [Caenorhabditis briggsae] 1.0E-123
blast CAC51056 Hypothetical protein Y39B6A.20 [Caenorhabditis elegans] ref|NP_741677.1| ASpartyl Protease family member (asp-1) [Caenorhabditis elegans] gb|AAF19442.1| aspartic protease 1 [Caenorhabditis elegans] gb|AAF19445.1| aspartic protease 1 [Caenorhabditis elegans] 1.0E-117
Protein Domains
Database ID Description E-Value
Pfam IPR001461 EMBL-EBI Peptidase A1, pepsin 2.1E-70
Sequence
Target Sequence 
>C. ELEGANS:183412_AT
gcatcgtcaacttttgtctcggaaactaggaagttctcaatttcctatggatccggttcc
tgctcgggacacctcgctcgcgacacaatcaccatgggcggcttgaaaatcgacaatcaa
gagttcggagtcgccgagaccctagcctcagtatttgctgagcagccagtcgacggaatc
ttgggactcggatggccggcgcttgccgacgataaggtcactccaccgatgcagaacctt
ctcccacagctcgacgcaaaggttttcacagtctggatggacaggaagcttcaaggatcg
aatggtggcaatgggggtcttatcacctacggagccctggatagtgttaattgtgccgat
gacatcagttatgtaccactgacggctaagacgtattgggagtttgcattggatggattt
gcagtgggaagcttttcggagacaaagacagccaaggtaatctccgacaccggaacctcc
tggatcggagcccctcactccatcatctccgccgtcgtcaaagccaccggagcaaaattc
gaatggaccactgagctctacgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATCGTCAACTTTTGTCTCGGAAA 597 309 376 Antisense
CAATTTCCTATGGATCCGGTTCCTG 89 179 413 Antisense
CTCGCGACACAATCACCATGGGCGG 487 233 452 Antisense
AAGAGTTCGGAGTCGCCGAGACCCT 260 151 494 Antisense
AGACCCTAGCCTCAGTATTTGCTGA 491 69 512 Antisense
TGAGCAGCCAGTCGACGGAATCTTG 190 569 534 Antisense
AATCTTGGGACTCGGATGGCCGGCG 203 171 552 Antisense
GGCGCTTGCCGACGATAAGGTCACT 243 543 573 Antisense
CAATGGGGGTCTTATCACCTACGGA 290 181 684 Antisense
CACCTACGGAGCCCTGGATAGTGTT 528 199 699 Antisense
CGAATGGACCACTGAGCTCTACGTG 518 253 915 Antisense
Sequence Source Affymetrix Proprietary Database