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[183411_at]

Description ZC449.4 /REP_DB=WormBase Gene ID /WP=CE05054 /TR=Q23329 /GB=AAK39381.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 04      4grp_high_8_8 > 09      6grp_highest_nonorm > 80      6grp_total > 15      4grp_total > 23      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 366
1 2 3 4 range
A 431.8
(3)
P 		131.8
(-2.3)
P 		94.1
(-3)
M 		389.8
(2.3)
P 		338
B 272.8
(3)
P 		149.8
(-0.6)
P 		66.1
(-3)
A 		239.7
(2)
P 		207
C 375.8
(3)
P 		177.1
(-1.6)
P 		114.1
(-3)
P 		350.7
(2.4)
P 		262
avr 360.1
(3) 		152.9
(-1.6) 		91.4
(-3) 		326.7
(2.3) 		269

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 265
1 2 3 4 5 6 range
A 290.7
(0.6)
P 		376.7
(3)
P 		198.3
(-2)
P 		226.1
(-1.3)
P 		223.8
(-1.3)
P 		164.3
(-3)
P 		212
B 404.7
(3)
P 		212.4
(-2.4)
P 		266.7
(-0.9)
P 		228.8
(-1.9)
P 		210.6
(-2.4)
P 		189.9
(-3)
P 		215
C 237.3
(2.3)
P 		251.1
(3)
P 		243.9
(2.6)
P 		176.7
(-1)
P 		139.4
(-3)
P 		159.6
(-1.9)
P 		112
avr 310.9
(3) 		280.1
(1.7) 		236.3
(-0.2) 		210.5
(-1.3) 		191.3
(-2.1) 		171.3
(-3) 		140
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 157.2
(3)
P 		28.6
(-2.8)
P 		24.6
(-3)
M 		57.1
(-1.5)
P 		133
B 87
(3)
P 		37
(-1.2)
P 		15.3
(-3)
A 		51.1
(-0)
P 		72
C 124.4
(3)
P 		50.9
(-2.2)
P 		39.8
(-3)
P 		59.1
(-1.6)
P 		85
avr 122.9
(3) 		38.8
(-2.2) 		26.6
(-3) 		55.8
(-1.2) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 53.6
(-2.1)
P 		134
(3)
P 		43.2
(-2.8)
P 		57.3
(-1.9)
P 		67.5
(-1.2)
P 		40
(-3)
P 		94
B 140.8
(3)
P 		70.7
(-2.2)
P 		64.8
(-2.7)
P 		60.6
(-3)
P 		85.6
(-1.1)
P 		70.8
(-2.2)
P 		80
C 88
(3)
P 		76.6
(1.7)
P 		62.1
(0)
P 		35.5
(-3)
P 		45.1
(-1.9)
P 		53.4
(-1)
P 		53
avr 94.1
(3) 		93.8
(3) 		56.7
(-2.2) 		51.1
(-3) 		66.1
(-0.9) 		54.7
(-2.5) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183411_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16621
Sequence Type Exemplar sequence
Representative Public ID ZC449.4 NCBI
Target Description ZC449.4 /REP_DB=WormBase Gene ID /WP=CE05054 /TR=Q23329 /GB=AAK39381.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076455(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076455 NCBI Caenorhabditis elegans ZC449.4 (ZC449.4) mRNA, complete cds. 9/11 None
ZC449.4 ENSEMBL cdna:known chromosome:CEL140:X:5028151:5029535:-1 gene:ZC449.4 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023555 5/11 Cross Hyb Matching Probes None
GENEFINDER00000023564 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5028413-5029547(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC449.4
Entrez Gene 191172 Entrez gene
SwissProt Q23329 EMBL-EBI
WormBase CE37688 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39381 Hypothetical protein ZC449.4 [Caenorhabditis elegans] ref|NP_508856.2| ZC449.4 [Caenorhabditis elegans] 5.0E-26
blast CAE68683 Hypothetical protein CBG14591 [Caenorhabditis briggsae] 8.0E-24
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508856.2 1 31-50
ZC449.4 1 31-50
Sequence
Target Sequence 
>C. ELEGANS:183411_AT
atgtgccacacaatttttattacgatatttagtcatttttacatcagcatagaaataagg
tttaattattccaaacagctcttcgacatggttgaccatccggacgcccaggaggaaatg
atgaacttcaacttaatcaaaaacggaaacgaggcgagctcccttcgcaatgagcttctt
gctctcatggtgctcttgtgccttctgattcttggcgttgtcatctactttgtcttccgt
tcaatggtttatattaaaaaagagaaagcccaagaacgtttgccgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTGCCACACAATTTTTATTACGA 181 49 13 Antisense
TTTAGTCATTTTTACATCAGCATAG 53 663 40 Antisense
AATTATTCCAAACAGCTCTTCGACA 525 175 76 Antisense
AACAGCTCTTCGACATGGTTGACCA 633 135 86 Antisense
TCGACATGGTTGACCATCCGGACGC 443 601 95 Antisense
CCATCCGGACGCCCAGGAGGAAATG 504 269 108 Antisense
TCCCTTCGCAATGAGCTTCTTGCTC 20 599 172 Antisense
CTCTTGTGCCTTCTGATTCTTGGCG 176 229 205 Antisense
TGATTCTTGGCGTTGTCATCTACTT 146 565 218 Antisense
TCTACTTTGTCTTCCGTTCAATGGT 336 609 236 Antisense
GAAAGCCCAAGAACGTTTGCCGATC 579 357 276 Antisense
Sequence Source Affymetrix Proprietary Database