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[183410_s_at]

Description D2062.4 /REP_DB=WormBase Gene ID /WP=CE09091 /TR=O16598 /GB=AAB66066.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 08      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 8.3
(-2.8)
A 		6.1
(-3)
A 		24.9
(-1.2)
A 		67.2
(3)
P 		61
B 1.7
(-3)
A 		5.9
(-2.3)
A 		2.2
(-2.9)
A 		35.5
(3)
A 		34
C 6.4
(-3)
A 		8.3
(-2.7)
A 		18
(-1.3)
A 		48.3
(3)
P 		42
avr 5.5
(-3) 		6.8
(-2.8) 		15
(-1.7) 		50.3
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 2.9
(-3)
A 		3.6
(-3)
A 		4.9
(-2.9)
A 		64.7
(1.2)
A 		61.3
(1)
A 		91.2
(3)
A 		88
B 5.5
(-2.8)
A 		3.5
(-3)
A 		6.1
(-2.8)
A 		5.4
(-2.8)
A 		43
(0.2)
A 		76.5
(3)
A 		73
C 4.1
(-3)
A 		8.2
(-2.7)
A 		5.4
(-2.9)
A 		7.3
(-2.7)
A 		76.2
(3)
A 		63
(1.9)
A 		72
avr 4.2
(-3) 		5.1
(-2.9) 		5.5
(-2.9) 		25.8
(-1.2) 		60.2
(1.6) 		76.9
(3) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 3
(-1.8)
A 		1.3
(-3)
A 		6.5
(0.7)
A 		9.8
(3)
P 		9
B 0.6
(-2.9)
A 		1.5
(-2.2)
A 		0.5
(-3)
A 		7.6
(3)
A 		7
C 2.1
(-3)
A 		2.4
(-2.7)
A 		6.3
(1.2)
A 		8.1
(3)
P 		6
avr 1.9
(-2.8) 		1.7
(-3) 		4.4
(-0.6) 		8.5
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 0.5
(-3)
A 		1.3
(-2.8)
A 		1.1
(-2.8)
A 		16.4
(1.4)
A 		18.5
(2)
A 		22.2
(3)
A 		22
B 1.9
(-2.8)
A 		1.2
(-3)
A 		1.5
(-2.9)
A 		1.4
(-3)
A 		17.5
(0.6)
A 		28.5
(3)
A 		27
C 1.5
(-3)
A 		2.5
(-2.7)
A 		1.4
(-3)
A 		1.5
(-3)
A 		24.7
(3)
A 		21.1
(2.1)
A 		23
avr 1.3
(-3) 		1.7
(-2.9) 		1.3
(-3) 		6.4
(-1.6) 		20.2
(2) 		23.9
(3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183410_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4758
Sequence Type Exemplar sequence
Representative Public ID D2062.4 NCBI
Target Description D2062.4 /REP_DB=WormBase Gene ID /WP=CE09091 /TR=O16598 /GB=AAB66066.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061908(11), NM_061907(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061908 NCBI Caenorhabditis elegans D2062.4 (D2062.4) mRNA, complete cds. 11/11 None
NM_061907 NCBI Caenorhabditis elegans D2062.5 (D2062.5) mRNA, complete cds. 11/11 A 
SNAP00000009053 ENSEMBL cdna:SNAP chromosome:CEL140:II:2622781:2623427:1 11/11 None
SNAP00000009055 ENSEMBL cdna:SNAP chromosome:CEL140:II:2623924:2624684:1 11/11 None
GENEFINDER00000009067 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2622525:2623507:1 11/11 None
D2062.5 ENSEMBL cdna:known chromosome:CEL140:II:2622664:2623427:1 gene:D2062.5 11/11 A 
D2062.4 ENSEMBL cdna:known chromosome:CEL140:II:2623924:2624531:1 gene:D2062.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2623922-2624646(+) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl D2062.5
D2062.4
Entrez Gene 183954 Entrez gene
183955 Entrez gene
SwissProt O16598 EMBL-EBI
O16597 EMBL-EBI
WormBase CE29744 Wormbase
CE09092 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494308 D2062.5 [Caenorhabditis elegans] gb|AAB66063.1| Hypothetical protein D2062.5 [Caenorhabditis elegans] 1.0E-78
blast NP_494308 D2062.5 [Caenorhabditis elegans] gb|AAB66063.1| Hypothetical protein D2062.5 [Caenorhabditis elegans] 3.0E-73
blast NP_494309 D2062.4 [Caenorhabditis elegans] gb|AAB66066.2| Hypothetical protein D2062.4 [Caenorhabditis elegans] 5.0E-72
blast NP_494309 D2062.4 [Caenorhabditis elegans] gb|AAB66066.2| Hypothetical protein D2062.4 [Caenorhabditis elegans] 2.0E-57
blast NP_494308 D2062.5 [Caenorhabditis elegans] gb|AAB66063.1| Hypothetical protein D2062.5 [Caenorhabditis elegans] 1.0E-56
blast NP_494308 D2062.5 [Caenorhabditis elegans] gb|AAB66063.1| Hypothetical protein D2062.5 [Caenorhabditis elegans] 4.0E-55
blast NP_494308 D2062.5 [Caenorhabditis elegans] gb|AAB66063.1| Hypothetical protein D2062.5 [Caenorhabditis elegans] 8.0E-54
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494309.2 1 29-51
NP_494308.1 1 52-74
D2062.5 1 52-74
D2062.4 1 29-51
SNAP00000009053 1 12-34
SNAP00000009055 1 12-34
GENEFINDER00000009067 2 22-39,82-104
Sequence
Target Sequence 
>C. ELEGANS:183410_S_AT
cacgcagctgctggcatggagactaccgcaaggattttgaagaaagcgtgcctggaccca
atgacagttgcagtgatggccgacgaaaagcgcgagaaaaaggataccgatgtgagttca
ggccaggcccgagttcaggccgatcaagttatcaagcctcagaatttttttttccagatt
tgcgatcaattcgacagtcttcacaagaaacctctgaagcattgcgctgacctcttcggc
tacgacacacttaccaaggacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACGCAGCTGCTGGCATGGAGACTA 650 199 205 Antisense
CAGCTGCTGGCATGGAGACTACCGC 693 203 209 Antisense
GCTGGCATGGAGACTACCGCAAGGA 511 293 214 Antisense
GGAGACTACCGCAAGGATTTTGAAG 336 517 222 Antisense
TGAAGAAAGCGTGCCTGGACCCAAT 543 571 242 Antisense
GTGCCTGGACCCAATGACAGTTGCA 238 479 252 Antisense
GACAGTTGCAGTGATGGCCGACGAA 265 369 267 Antisense
CAGTGATGGCCGACGAAAAGCGCGA 653 205 275 Antisense
AAGAAACCTCTGAAGCATTGCGCTG 170 153 409 Antisense
TCTGAAGCATTGCGCTGACCTCTTC 209 609 417 Antisense
GCTACGACACACTTACCAAGGACTA 627 301 443 Antisense
Sequence Source Affymetrix Proprietary Database